Locus 586

Sequence ID 3L_DroMel_CAF1
Location 1,693,997 – 1,694,088
Length 91
Max. P 0.621142
window895

overview

Window 5

Location 1,693,997 – 1,694,088
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 82.15
Mean single sequence MFE -24.29
Consensus MFE -15.73
Energy contribution -16.19
Covariance contribution 0.46
Combinations/Pair 1.18
Mean z-score -1.86
Structure conservation index 0.65
SVM decision value 0.18
SVM RNA-class probability 0.621142
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1693997 91 - 23771897
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGUGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCAGCAACAAAGGCAAU
.(((((((((..................)))))))......(((......)))...))((((....).((.......))......)))... ( -24.07)
>DroSec_CAF1 56006 91 - 1
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCUGGAACCAGCGUCCCCGGCAACAAAGACAAU
.(((((((((..................)))))))...((((((((((....)))).)))))).....))(((...(....)...)))... ( -27.17)
>DroSim_CAF1 53928 91 - 1
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCGGCAACAAAGGCAAU
((((((((((..................)))))))......((.((((....))))))(((((.((....))..))))).......))).. ( -27.77)
>DroEre_CAF1 59413 72 - 1
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAGUGACCACAUUGCGCCGGAA-------------------AAGCAAU
((((((((((..................)))))))...(..(((((((....)))).)))..)..-------------------..))).. ( -21.27)
>DroYak_CAF1 57244 91 - 1
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCAGCAACCAAAGCAAU
((((((((((..................)))))))......((.((((....))))((((.(....).)))).....)).......))).. ( -23.57)
>DroAna_CAF1 54093 70 - 1
---GGCAGACCUCUAAUUAAACGCAGACGGCUGCCAAAUUAGCUAAUGACAACAUUGUGCCGGAACCGG------------------CAAC
---(((((.(((((..........))).)))))))........(((((....)))))(((((....)))------------------)).. ( -21.90)
>consensus
UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCC_GCAACAAAGGCAAU
((((((((((..................)))))))......(((((((....)))).)))..........................))).. (-15.73 = -16.19 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:58 2006