Locus 5849

Sequence ID 3L_DroMel_CAF1
Location 15,769,373 – 15,769,492
Length 119
Max. P 0.584333
window9330

overview

Window 0

Location 15,769,373 – 15,769,492
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.68
Mean single sequence MFE -23.38
Consensus MFE -20.66
Energy contribution -20.35
Covariance contribution -0.31
Combinations/Pair 1.16
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.10
SVM RNA-class probability 0.584333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15769373 119 + 23771897
-GGAAAUUUAUUCAUGUUCCUCAUUUUUUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA
-((((...........))))(((((..((((..(((((((.((((.(((.(((((((((((..........)))))).))))).)))...))))..)))))))..)))).....))))). ( -23.90)
>DroSec_CAF1 20963 118 + 1
-GGAAAUUUAUUCAUGUUUCUCGUUU-UUUAUUGUGAUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA
-(((((((((....((((((((....-((......))....((((.(((.(((((((((((..........)))))).))))).)))...))))))))))))...)))))))))...... ( -19.70)
>DroEre_CAF1 21296 118 + 1
-GGAAAUUUAUUCAUGUUCCUCGUUU-UUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCAGGGGGAAACGCUUUGAAUUUUUGAUGAA
-((((...........))))(((((.-((((..((((((..(((..(((.(((((((((((..........)))))).))))).))).....)))..))))))..)))).....))))). ( -21.00)
>DroAna_CAF1 17190 119 + 1
UGGGGAUUUGUUCAUGUUCCUCUUUU-UUUAUUGUGUUUUACUCGUAAUAUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGAGGGGAGACGCUUUGAAUUUUUGAUGAA
.(((((...........)))))....-((((..(((((((.((((.(((((((((((((((..........)))))).)))))))))...))))..)))))))..))))........... ( -28.90)
>consensus
_GGAAAUUUAUUCAUGUUCCUCGUUU_UUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA
.((((...........))))(((((..((((..(((((((.((((.(((.(((((((((((..........)))))).))))).)))...))))..)))))))..)))).....))))). (-20.66 = -20.35 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:04 2006