| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,768,371 – 15,768,491 |
| Length | 120 |
| Max. P | 0.871446 |
| Location | 15,768,371 – 15,768,491 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.80 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -25.79 |
| Energy contribution | -26.60 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15768371 120 + 23771897 AUUUAAAUCGCGCCACGCGCACCGAGCGGAGGUGAAUAAGUAUGGAAAAUGGGGAAAACUAUGCCCCGGGCACUUUGCGCCAACGUCAGACAUAAUUUUCCAGCGAAACCGAAUGAAAAU .......(((((((.(((.......)))..))).........((((((((((((.........))))((((.....)).)).............)))))))))))).............. ( -32.70) >DroSec_CAF1 19960 120 + 1 AUUUAAAUCGCGCCACGCGCACCGAGCGAAGGUACAUAAGUAUGGAAAAUGGGGAAAACUAUGCCCCGGGCACUUUGCGCCAACGUCAGACAUAAUUUUCCAGCGAAACCGAAUGAAAAU .......(((((((...(((.....)))..))).........((((((((((((.........))))((((.....)).)).............)))))))))))).............. ( -31.90) >DroEre_CAF1 20279 116 + 1 AUUUAAAUCGCGCCACGCGCACCGAGCGGAGGUA----AACAUGGAAAAUGGGGAAAACUAUGCCCCGGGCACUUUGCGCCAACGUCAGACAUAAUUUUCCAGCGAAACCGAAUGAAAAU .......(((((((.(((.......)))..))).----....((((((((((((.........))))((((.....)).)).............)))))))))))).............. ( -32.70) >DroAna_CAF1 16251 110 + 1 AUUUAAAUCGCGCCACGCGCAUCUACUGACGGUA----AAUAUGGAAAAUGGGGAAAACUAUGCCCCAGGCACUUUGC------GUCAGACAUAAUUUUCCAACGAAACCGAAUGGAAAU .........((((...)))).....((((((.((----((....(....(((((.........)))))..)..)))))------))))).......((((((.((....))..)))))). ( -27.60) >consensus AUUUAAAUCGCGCCACGCGCACCGAGCGAAGGUA____AAUAUGGAAAAUGGGGAAAACUAUGCCCCGGGCACUUUGCGCCAACGUCAGACAUAAUUUUCCAGCGAAACCGAAUGAAAAU .......(((((((.(((.......)))..))).........((((((((((((.........))))((((.....)).)).............)))))))))))).............. (-25.79 = -26.60 + 0.81)
| Location | 15,768,371 – 15,768,491 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Mean single sequence MFE | -36.55 |
| Consensus MFE | -29.60 |
| Energy contribution | -30.48 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15768371 120 - 23771897 AUUUUCAUUCGGUUUCGCUGGAAAAUUAUGUCUGACGUUGGCGCAAAGUGCCCGGGGCAUAGUUUUCCCCAUUUUCCAUACUUAUUCACCUCCGCUCGGUGCGCGUGGCGCGAUUUAAAU ........(((((..(((.((((((((((((((..((..(((((...)))))))))))))))))))))..................((((.......)))).)))..)).)))....... ( -36.30) >DroSec_CAF1 19960 120 - 1 AUUUUCAUUCGGUUUCGCUGGAAAAUUAUGUCUGACGUUGGCGCAAAGUGCCCGGGGCAUAGUUUUCCCCAUUUUCCAUACUUAUGUACCUUCGCUCGGUGCGCGUGGCGCGAUUUAAAU ........(((((..(((.((((((((((((((..((..(((((...))))))))))))))))))))).................(((((.......))))))))..)).)))....... ( -38.90) >DroEre_CAF1 20279 116 - 1 AUUUUCAUUCGGUUUCGCUGGAAAAUUAUGUCUGACGUUGGCGCAAAGUGCCCGGGGCAUAGUUUUCCCCAUUUUCCAUGUU----UACCUCCGCUCGGUGCGCGUGGCGCGAUUUAAAU ..............((((.((((((((((((((..((..(((((...))))))))))))))))))))).......((((((.----((((.......)))).)))))).))))....... ( -39.90) >DroAna_CAF1 16251 110 - 1 AUUUCCAUUCGGUUUCGUUGGAAAAUUAUGUCUGAC------GCAAAGUGCCUGGGGCAUAGUUUUCCCCAUUUUCCAUAUU----UACCGUCAGUAGAUGCGCGUGGCGCGAUUUAAAU ........(((((..(((.((((((((((((((.(.------((.....)).).))))))))))))))..........((((----(((.....))))))).)))..)).)))....... ( -31.10) >consensus AUUUUCAUUCGGUUUCGCUGGAAAAUUAUGUCUGACGUUGGCGCAAAGUGCCCGGGGCAUAGUUUUCCCCAUUUUCCAUACU____UACCUCCGCUCGGUGCGCGUGGCGCGAUUUAAAU ........(((((..(((.((((((((((((((..((..(((((...)))))))))))))))))))))..................((((.......)))).)))..)).)))....... (-29.60 = -30.48 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:03 2006