Locus 5843

Sequence ID 3L_DroMel_CAF1
Location 15,764,224 – 15,764,324
Length 100
Max. P 0.514345
window9316

overview

Window 6

Location 15,764,224 – 15,764,324
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -30.80
Consensus MFE -27.75
Energy contribution -28.12
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.90
SVM decision value -0.04
SVM RNA-class probability 0.514345
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15764224 100 - 23771897
UGAGUUGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU
.(((((((((...(((((.((.(((...(((((..(.(((.......)))...)..)))))..)))))))))))))))))))....(((((....))))) ( -31.70)
>DroSec_CAF1 15800 100 - 1
UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUUGGCCAAAACUUUCGGUGAACUCUCACACUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU
.((((..(((...((((((.(.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) ( -30.70)
>DroSim_CAF1 16799 100 - 1
UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUUGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU
.((((..(((...(((((.((.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) ( -32.20)
>DroEre_CAF1 15930 99 - 1
UGAGUCGGG-CCAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCCUAACUCCUGCAGCCCUUUGGGGCU
.((((..((-...(((((.((.(((...(((((..(.(((.......)))...)..)))))..)))))))))).))..))))....(((((....))))) ( -28.60)
>consensus
UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU
.((((..(((...((((((.(.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) (-27.75 = -28.12 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:50 2006