Locus 5837

Sequence ID 3L_DroMel_CAF1
Location 15,759,232 – 15,759,351
Length 119
Max. P 0.940241
window9300

overview

Window 0

Location 15,759,232 – 15,759,351
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.40
Mean single sequence MFE -25.18
Consensus MFE -25.18
Energy contribution -25.18
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 1.29
SVM RNA-class probability 0.940241
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15759232 119 + 23771897
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCGGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -25.60)
>DroSec_CAF1 10860 119 + 1
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUUGAACAAAGCAAGGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -25.60)
>DroSim_CAF1 11132 119 + 1
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -24.90)
>DroEre_CAF1 11113 119 + 1
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCGAGGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -24.90)
>DroAna_CAF1 5663 116 + 1
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAAAAGGAGCAGCCAAGGAGUCGAACAAA----GGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)....................)))))....))...))))...----.... ( -24.90)
>consensus
CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA_AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC
...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)....................)))))....))...))))........... (-25.18 = -25.18 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:35 2006