| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,685,330 – 1,685,442 |
| Length | 112 |
| Max. P | 0.725966 |
| Location | 1,685,330 – 1,685,442 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -46.88 |
| Consensus MFE | -30.39 |
| Energy contribution | -32.03 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1685330 112 - 23771897 AUAAAGCUGUCAUCUGGUGGUCCCUCCAUGGCGGCCAAGCUGCUGGCCAUAAUGCUUCUGCUGGUGGCGACGGGAGUGCAGGCGCGGCGUCUGGGCCACCGACGCCUAAUCA .....((.(((....(((((.(((...(((.(((((..(((.((((((((...((....))..)))))..))).)))...))).)).)))..)))))))))))))....... ( -45.50) >DroSec_CAF1 47474 112 - 1 AUAAAGGUGUCAUCUGGUGGUCCCUCUAUGGCGGCCAAGCUGCUGGCCAUACUGCUCCUGCUUGUGGCAACGGAAGUGCAGGCGCGGCGUCUGGGCCACCGACGCCUCAUCA ....(((((((....(((((.(((.....((((((((......)))))...((((.(((((((.((....)).))..))))).)))).))).)))))))))))))))..... ( -52.70) >DroSim_CAF1 47599 112 - 1 AUAAAGGUGUCAUCUGGUGGUCCCUCCAUGGCGGCCAAGCUGCUGGCCAUAUUGCUCCUGCUGGUGGCAACGGGAGUGCAGGCGCGGCGUCUGGGCCACCGACGCCUCAUCA ....(((((((....(((((.(((...(((.(((((..(((.((((((((...((....))..)))))..))).)))...))).)).)))..)))))))))))))))..... ( -51.70) >DroEre_CAF1 51043 112 - 1 AUCAAGGUGUCAUCUGGGAGCGCCUCCUUGGUGGCCAAGGCGCUGGCCAUAAUGCUCCUGCUGGUGGCGACGGGAGUGCAGGCACGGCGGCUGGGCCACCGACGCCUCAUCA ....(((((((....(((((...))))).(((((((.((.((((((((....((((((((.((....)).))))))))..))).))))).)).))))))))))))))..... ( -59.00) >DroYak_CAF1 48486 112 - 1 AUGAAGGUGUCAUCCGGGAGUCGCUCCAUGGCUGCCAAGCUCCUGGCCAUAAUGCUGCUGCUGGUGGCGACGGGAAUCCAGGCGCGGCGUCUGGGCCACCGACGCCUCAUCA ((((.((((((.(((((..(((((.((.(((((....)))((((((((((...((....))..)))))..)))))...)))).)))))..))))).....)))))))))).. ( -48.80) >DroAna_CAF1 45543 112 - 1 AAACAGGACUCCCCUCGAAGUCAAUCUCUGUCGGGCUACCUCAUCGCAGUAAUGUUACUCCUGACUGCGACAGGAAUCCAGACAAGACGCCUCUCACAUCGCCGCCUCAUCA ......((((........))))..(((.((((((..(.(((..(((((((...(......)..))))))).))))..)).)))))))......................... ( -23.60) >consensus AUAAAGGUGUCAUCUGGUAGUCCCUCCAUGGCGGCCAAGCUGCUGGCCAUAAUGCUCCUGCUGGUGGCGACGGGAGUGCAGGCGCGGCGUCUGGGCCACCGACGCCUCAUCA ....(((((((.....(((.((((.....((((((...)))))).(((((...((....))..)))))...)))).))).(((.(((...))).)))...)))))))..... (-30.39 = -32.03 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:54 2006