Locus 5816

Sequence ID 3L_DroMel_CAF1
Location 15,743,051 – 15,743,147
Length 96
Max. P 0.860991
window9239

overview

Window 9

Location 15,743,051 – 15,743,147
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -21.28
Consensus MFE -19.14
Energy contribution -18.90
Covariance contribution -0.24
Combinations/Pair 1.24
Mean z-score -1.38
Structure conservation index 0.90
SVM decision value 0.83
SVM RNA-class probability 0.860991
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15743051 96 - 23771897
AGGUAAAGGUAAAGG-AAAAUUGAAAGGUAAAUUCAAAGCUGAAGUGAAAGACAUUGAUUGGGCUUCCCUUUCGGCGUUUGAGAUAGACAGUUCUUA
...............-......(((..((...(((((((((((((.(.(((.((.....))..))).).))))))).))))))....))..)))... ( -17.90)
>DroSec_CAF1 58227 97 - 1
AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAAGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA
......................(((..((...((((((((((((((..(((.((.....))..)))..)))))))).))))))....))..)))... ( -23.30)
>DroSim_CAF1 60406 97 - 1
AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAUGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA
......................(((..((...((((((((((((((..(((.((.....))..)))..))))))))).)))))....))..)))... ( -23.10)
>DroEre_CAF1 49623 96 - 1
AGGAAAAGGUAGAGGU-AAAUUGAAAGGUAAAUUCAAAGCUGGGGUGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGCUAUGCAGUUCUUG
(((((...(((..(((-..(((....)))....(((((((((..(.(((((.((.....))..))).)))..)))).)))))))).)))..))))). ( -20.00)
>DroYak_CAF1 158581 95 - 1
AGGAAAAGGUA-AGGU-AAAUUGAAAGGUAAAUUCCAAGCCGGAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGUGUUUGAGAUAGACAGUUCUUA
(((((...((.-..((-...(..((.((......))..((((((((..(((.((.....))..)))..)))))))).))..).))..))..))))). ( -22.10)
>consensus
AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAAGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA
......................(((..((...(((((((((((((((.(((.((.....))..))).))))))))).))))))....))..)))... (-19.14 = -18.90 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:38 2006