Locus 5806

Sequence ID 3L_DroMel_CAF1
Location 15,713,504 – 15,713,608
Length 104
Max. P 0.737922
window9226

overview

Window 6

Location 15,713,504 – 15,713,608
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 86.54
Mean single sequence MFE -27.52
Consensus MFE -22.78
Energy contribution -22.45
Covariance contribution -0.33
Combinations/Pair 1.25
Mean z-score -2.01
Structure conservation index 0.83
SVM decision value 0.44
SVM RNA-class probability 0.737922
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15713504 104 + 23771897
ACCAA-AAAAAGACAAUCCUAG-AGCUAAAGUUGGUUUACCGCUCGGCUGAGCGAAGAAGUUCAAUGCACAAGUUCAUGAACUUGGGGAAACCGACUUGAAAAG-GU
.....-...........(((..-.....((((((((((.((((((....))))....(((((((..((....))...))))))).)).))))))))))....))-). ( -28.20)
>DroSec_CAF1 28898 104 + 1
ACCAA-AAAAAGACAAUCCUGG-AGCUAAAGUUGGUUUACCGCUCGGCUGAGCGAAGAAGUUCAAUGCACAAGUUCAUGAACUUGGGGAAACCGACUUGAAAAG-GU
.....-...........(((..-.....((((((((((.((((((....))))....(((((((..((....))...))))))).)).))))))))))....))-). ( -29.30)
>DroSim_CAF1 30040 104 + 1
ACCGA-AAAAAGACAAUCCUGG-AGCUAAAGUUGGUUUACCGCUCGGCUGAGCGAAGAAGUUCAAUGCACAAGUUCAUGAACUUGGGGAAACCGACUUGAAAAG-GU
.....-...........(((..-.....((((((((((.((((((....))))....(((((((..((....))...))))))).)).))))))))))....))-). ( -29.30)
>DroYak_CAF1 65897 104 + 1
ACCGA-AAAAAGACAAUCCUAG-AGCUAAAGUUGGUUUACCGCUCGGCUGAGCGAAGAAGUUCAAUGCACAAGUUCAUGAACUUGGGGAGAGCGACUUGAAAAG-GU
(((..-...(((.........(-(((((....))))))..(((((.(((((((......)))))..)).((((((....))))))....))))).))).....)-)) ( -27.50)
>DroAna_CAF1 26629 102 + 1
----A-AAAUAGACAAUCCAAGAAGCUAAAGUUGGUUUACCGCUCGGUUGAGCGAAGAAGUUCAAUGAUCAAGUUCAUGAACUUGGAGUAACCAACUUGAAGUGGGU
----.-.........(((((........(((((((((..((((((....))))....(((((((.(((......))))))))))))...)))))))))....))))) ( -31.00)
>DroPer_CAF1 45357 101 + 1
GUCGAAAAAAAAACAAUCGUAA-AGUUUGAGUUGGUUUGCCGCUUGGCUAAGUGAAGAAGUUCAACGCACAAGUUCAUGAACUUGC----ACCAAUUCGUAAAG-GU
......................-.....((((((((..(((((((....)))))...(((((((((......))...)))))))))----))))))))......-.. ( -19.80)
>consensus
ACCGA_AAAAAGACAAUCCUAG_AGCUAAAGUUGGUUUACCGCUCGGCUGAGCGAAGAAGUUCAAUGCACAAGUUCAUGAACUUGGGGAAACCGACUUGAAAAG_GU
............................((((((((((..(((((....)))))...(((((((..((....))...)))))))....))))))))))......... (-22.78 = -22.45 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:25 2006