Locus 5805

Sequence ID 3L_DroMel_CAF1
Location 15,710,529 – 15,710,632
Length 103
Max. P 0.835248
window9225

overview

Window 5

Location 15,710,529 – 15,710,632
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.10
Mean single sequence MFE -29.18
Consensus MFE -18.39
Energy contribution -19.67
Covariance contribution 1.28
Combinations/Pair 1.11
Mean z-score -2.30
Structure conservation index 0.63
SVM decision value 0.73
SVM RNA-class probability 0.835248
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15710529 103 + 23771897
AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGAGCCACGCCCACACUCGGUCAGCCCUAUGGGU
......................(((((((...(((((((.....)))))))..))).......(((((((......))))))).))))....((((...)))) ( -31.80)
>DroSec_CAF1 26013 103 + 1
AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUCGGUGGGGCCACGCCCACUCUCGGCCAGCCCUAUGGGU
.......................((.(((...(((((((.....)))))))..))).)).....((.(((((((...(((.......)))..))))))).)). ( -27.80)
>DroEre_CAF1 17289 103 + 1
AUAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGCGGGGCCACGCCCACGAGCAGGCCGCCCGGUGGGU
.................((..((.(((((.....((((....((((......))))..)))).(((((((......)))))))........))))).))..)) ( -37.00)
>DroYak_CAF1 62974 103 + 1
AUAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGGGCCACGCCCACAAUGGGGCAGCCCGGUGGGU
.................((..((.((((....(((((((.....))))))).((...(((((.(((((((......)))))))))))).)).)))).))..)) ( -37.80)
>DroMoj_CAF1 66361 80 + 1
AUAAUAAUAAAUAACUCGUCAACGAGGCGAAAUCAAUGUAAAACGCGUCGAAGCGUAUCAUUAGUGUGUGGG-----------------------CGUUGUGU
...............(((((.....)))))...((((((...((((......)))).((((......)))))-----------------------)))))... ( -16.40)
>DroAna_CAF1 23034 92 + 1
AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGCGGGCGGUGCCACGCCCACACUCUGG-----------UA
.................((.((.((.(((...(((((((.....)))))))..))).)).)).))(((((......))))).........-----------.. ( -24.30)
>consensus
AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGGGCCACGCCCACACUCGGGCAGCCCGAUGGGU
.......................((.(((...(((((((.....)))))))..))).))....(((((((......))))))).................... (-18.39 = -19.67 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:24 2006