Locus 5801

Sequence ID 3L_DroMel_CAF1
Location 15,700,470 – 15,700,561
Length 91
Max. P 0.618019
window9219

overview

Window 9

Location 15,700,470 – 15,700,561
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -19.92
Consensus MFE -14.99
Energy contribution -15.13
Covariance contribution 0.14
Combinations/Pair 1.20
Mean z-score -1.28
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.618019
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15700470 91 - 23771897
GCACCGCCUCGAACUUGGUCCUC---------GCCGUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA
..........(((((((((....---------((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... ( -17.90)
>DroVir_CAF1 46298 92 - 1
GAGU-------CACUUGGCUGUUGACGGCAUUGUCGUCAU-UUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAGAAGUCGCCAAGUUUUCUAAUUAUA
(((.-------.(((((((...(((((((...))))))).-....(.((((.((((((((.....))))))))...)))))))))))).)))........ ( -26.80)
>DroEre_CAF1 7416 91 - 1
GCACCGCCUCAAACUUGGUCGUA---------GCCGUCAUUUUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA
..........((((((((.((..---------((((......)).))((((.((((((((.....))))))))...)))))))))))))).......... ( -17.70)
>DroYak_CAF1 52335 91 - 1
GCAGCGCCUCAAACUUGGUCCUC---------GCCGUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA
..........(((((((((....---------((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... ( -17.50)
>DroMoj_CAF1 55813 92 - 1
GAGU-------CGCUUGGCUGUCGUCGGCGUUGUCGUCAU-UUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAGAAGUCGCCAAGUUUUCUAAUUAUA
(((.-------.(((((((.......((((....))))..-....(.((((.((((((((.....))))))))...)))))))))))).)))........ ( -23.70)
>DroAna_CAF1 14228 93 - 1
GCAAUGCCUCGAACUUGGUCCGG-------CCUUUUUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA
..........(((((((((...(-------((...........).))((((.((((((((.....))))))))...)))).))))))))).......... ( -15.90)
>consensus
GCACCGCCUC_AACUUGGUCCUC_________GCCGUCAUUUUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA
..........(((((((((.............((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... (-14.99 = -15.13 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:19 2006