Locus 5791

Sequence ID 3L_DroMel_CAF1
Location 15,675,006 – 15,675,110
Length 104
Max. P 0.723884
window9201

overview

Window 1

Location 15,675,006 – 15,675,110
Length 104
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 79.55
Mean single sequence MFE -34.82
Consensus MFE -15.77
Energy contribution -16.05
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -2.14
Structure conservation index 0.45
SVM decision value 0.41
SVM RNA-class probability 0.723884
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15675006 104 - 23771897
AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCCAUUCCAGUUGGUGACAAUGGCGGUGUGAAAAUCGCCGAGGGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA
..........((.(((..((...(.(((((((((......((((....))))((((((......))))))..))))))))).-----)..))..))).))......... ( -39.60)
>DroSec_CAF1 34544 99 - 1
AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC-----AGUUGGUGACAAUGGCGGUGUGAAAAUCGCCCAGGGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA
..........((.(((..((...(.(((((((((-----.((((....))))((((((......))))))..))))))))).-----)..))..))).))......... ( -38.70)
>DroSim_CAF1 34617 99 - 1
AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC-----AUUUGGUGACAAUGCCGGUGUGAAAAUCGCCGAGAGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA
................((.(((((((((((....-----...)))))))..(((((.(.((...((((((....))))))..-----.)).).)))))..)))).)).. ( -36.50)
>DroEre_CAF1 33920 84 - 1
AAACAUAAAAGGCGCCGU--------------CC-----AGUUGGUGACAAUGGCGGUGUGAAAAUCGGCGAGGGGUGC------UGCUUGGCUGCGACUGUCGAACAA
...........((((((.--------------((-----(.(((....)))))))))))).....(((((.((..((((------(....))).))..))))))).... ( -29.20)
>DroYak_CAF1 35057 90 - 1
AAACAUUAAAAGCGCCGU--------------CC-----AGUUGGUGACAAUGGCGGUGUAAAAAUCGGCGAGGGGUGGUGCUGGUGCUUGGCUGGGACUGUCGAACAA
..........((((((..--------------((-----.((((....))))(.((((......)))).)...))..))))))..((.(((((.......))))).)). ( -30.10)
>consensus
AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC_____AGUUGGUGACAAUGGCGGUGUGAAAAUCGCCGAGGGGUGGUGU_____CCGGGGUGGCACUGUCGAACAA
...........((((((((.....................((((....))))))))))))......((((..((.............))..)))).............. (-15.77 = -16.05 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:02 2006