| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,652,166 – 1,652,266 |
| Length | 100 |
| Max. P | 0.598469 |
| Location | 1,652,166 – 1,652,266 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -13.49 |
| Energy contribution | -13.52 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1652166 100 + 23771897 GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAGUUGUCAAA-AGGCGGAAGCCCGUUUUGACAGGAGGGUGGCCAGAUAGCUGGAAUUU-GGCAC-GCAUUCA- ....................(((((.....)))))((((((-((((....)))..)))))))..(((.((((((((((.......))))-))).)-)).))).- ( -31.00) >DroVir_CAF1 15745 100 + 1 GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAUUUGACAAAUGAGCGGAAGCCCAUUUUGACAGUAGCGUGGCCAGAUGCGUAGCAAGU-GGC--AACGCUGU- .....................((((..((((.((((.(......))))).)))).......))))(((((.((((..(((...)))..)-)))--.)))))..- ( -26.80) >DroGri_CAF1 15803 101 + 1 GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAGUUGUCAAAGCGGCGGAAGCCAAAUCUGACAGUGGCGUGGCCAGAUGGUGUGCGGGU-GGC--AACGCUCGC .....(((.........((.(((((.....))))).)).....(((....)))...)))..((.((((...))))..))....((((((-(..--..))))))) ( -32.00) >DroEre_CAF1 13995 100 + 1 GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAGUUGUCAAA-AGGCGGAAGCGCAAUUUGACAGGAGGGUGGCCAGAUCGCUGGAAUUU-GGCAC-GCAUUCA- ....................(((((.....)))))((((((-..(((....)))..))))))..(((.(((((((((((....).))))-))).)-)).))).- ( -29.20) >DroYak_CAF1 14173 100 + 1 GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAGUUGUCAAA-AGGCGGAAGCGCGAUUUGACAGGAGGGUGGCCAGAUCGCUGAAAUUUCGGCAC-GCAUUC-- ........((((............((.((.((.((((((((-..(((....)))..)))))))....).)).))...))(((((....)))))..-.)))).-- ( -24.80) >DroMoj_CAF1 15989 100 + 1 GAAAAAGAAAUGAAAAGGAAAACUAAGGGGCAUUUGACAAAGCAGCGGAAGCAGUUUUUGACAGUAGUGUGGCCAGAUGGGUGGCAAGU-GGC--AACGCUCA- .................(((((((.....((..........)).((....)))))))))........(((.(((.....))).)))(((-(..--..))))..- ( -22.10) >consensus GAAAAAGAAAUGAAAAGGAAAACUGAGGGGCAGUUGUCAAA_AGGCGGAAGCCCAAUUUGACAGGAGGGUGGCCAGAUGGCUGGAAUGU_GGC___ACACUCA_ .................................((((((((...((....))....))))))))(((.((.(((................)))...)).))).. (-13.49 = -13.52 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:43 2006