Locus 5755

Sequence ID 3L_DroMel_CAF1
Location 15,630,936 – 15,631,056
Length 120
Max. P 0.989727
window9131

overview

Window 1

Location 15,630,936 – 15,631,056
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -40.10
Consensus MFE -39.06
Energy contribution -39.88
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -2.66
Structure conservation index 0.97
SVM decision value 2.18
SVM RNA-class probability 0.989727
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15630936 120 + 23771897
CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA
...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... ( -43.20)
>DroSec_CAF1 53220 120 + 1
CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAGUUAUGUAAGAGGAUGCACCUAGAAAAAA
...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....(((((.((((((....)))))).)).)))..)))))))).)))))...... ( -41.70)
>DroSim_CAF1 54182 120 + 1
CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA
...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... ( -43.20)
>DroYak_CAF1 57754 119 + 1
CGACUGAGCAGCAAGGAGUCCUGGUCCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUCCGUAGUUGGGAUUUAUGUAAGAGGAUGCACCCAGAAAAA-
...(((...........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((........))))))).)))..))))))))...))).....- ( -32.30)
>consensus
CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA
...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... (-39.06 = -39.88 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:54 2006