Locus 5721

Sequence ID 3L_DroMel_CAF1
Location 15,599,683 – 15,599,803
Length 120
Max. P 0.991459
window9058

overview

Window 8

Location 15,599,683 – 15,599,803
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.83
Mean single sequence MFE -34.90
Consensus MFE -32.90
Energy contribution -33.10
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.94
SVM decision value 2.27
SVM RNA-class probability 0.991459
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15599683 120 + 23771897
UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUAUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU
...((((.(((.....((((((........))))))(((.(((((((((((........))).)))))))).)))...))).)))).....(((((......)))))............. ( -33.40)
>DroSec_CAF1 22904 119 + 1
UUGCAAUUAUAGCCACGUUAACAGCGAAAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAA-AAGCCAGCGACUCUUGGCAAACAAACCGAAU
...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((..-....))))))....))))............. ( -35.50)
>DroSim_CAF1 22647 120 + 1
UUGCAAUUAUAGCCACGUUAACAGCGAAAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU
...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. ( -35.00)
>DroEre_CAF1 22906 120 + 1
UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCUACGUCGACUGCGACCGCAAAAUAUCGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU
...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. ( -37.10)
>DroYak_CAF1 24338 120 + 1
UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGCCGCGGAGACAGCGCUACGUCGACUGCGACCGCAAAAUAUCGUUGAAAAAGCCAGCGGCUCUUGGCAAACAAACCGAAU
...........((((.((((((........)))))).(((((.(((....).))(((...((((((((....))).......)))))...)))..)))))...))))............. ( -33.51)
>consensus
UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU
...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. (-32.90 = -33.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:42 2006