Locus 5707

Sequence ID 3L_DroMel_CAF1
Location 15,592,323 – 15,592,443
Length 120
Max. P 0.890792
window9026

overview

Window 6

Location 15,592,323 – 15,592,443
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -30.50
Consensus MFE -30.50
Energy contribution -30.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 1.00
SVM decision value 0.96
SVM RNA-class probability 0.890792
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15592323 120 - 23771897
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50)
>DroSec_CAF1 15720 120 - 1
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50)
>DroSim_CAF1 15669 120 - 1
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50)
>DroEre_CAF1 15732 120 - 1
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50)
>DroYak_CAF1 16949 120 - 1
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50)
>consensus
CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU
((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... (-30.50 = -30.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:10 2006