Locus 5696

Sequence ID 3L_DroMel_CAF1
Location 15,587,678 – 15,587,798
Length 120
Max. P 0.894727
window9006

overview

Window 6

Location 15,587,678 – 15,587,798
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -40.25
Consensus MFE -36.90
Energy contribution -37.02
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 0.98
SVM RNA-class probability 0.894727
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15587678 120 + 23771897
CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUAAAUCUAUUGCGCCA
...(((...((((((((.........)))))))((.(((((((((((((.(((.((..........)).))).).)))))))..))))))).....).)))((((((.....)))))).. ( -42.50)
>DroSec_CAF1 11022 120 + 1
CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCAUACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUUAAUCUAUUGCGCCA
...(((...))).((((((((.(((((((((((((.(((((((((((((...(((.............)))...))))))))..))))))).)))...)))))))).))))..))))... ( -43.22)
>DroSim_CAF1 10975 120 + 1
CAAGCGUUUCGCUCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCAUACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUUAAUCUAUUGCGCCA
..((((...))))((((((((.(((((((((((((.(((((((((((((...(((.............)))...))))))))..))))))).)))...)))))))).))))..))))... ( -44.02)
>DroEre_CAF1 10911 120 + 1
CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGACACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCCUCCCGUGUAAAUCUGUUGCGUCA
...((((..((((((((.........)))))))).....)))).(((.(((((((.....((.........((.((((......)))).))..........))....))))).)).))). ( -36.61)
>DroYak_CAF1 12167 120 + 1
CAAGCGUUUCGCCCGCAAGAUUGAUAUGCGGGUACACAUGCGCAGACACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGCGGCUACUCCUCCCGUGUAAAUCUGUUGCGUCA
...((((...(((((((.........)))))))....))))((((.......(((.....)))......))))(((((....((((((((.........))))).....)))..))))). ( -34.92)
>consensus
CAAGCGUUUCGCCCGCAAGAUAGAUAUGCGGGUGCACAUGCGCAGGCACACAGGUGAAAAACCCUACAACUGCGAUGCCUGUCAGCGUGGCUACUCGUCGCGUGUAAAUCUAUUGCGCCA
...((((..((((((((.........)))))))).....)))).(((.....(((.....)))........((((((.......(((((((.....))))))).......))))))))). (-36.90 = -37.02 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006