Locus 5695

Sequence ID 3L_DroMel_CAF1
Location 15,587,358 – 15,587,478
Length 120
Max. P 0.975185
window9005

overview

Window 5

Location 15,587,358 – 15,587,478
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -38.34
Consensus MFE -37.30
Energy contribution -37.14
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 1.74
SVM RNA-class probability 0.975185
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15587358 120 + 23771897
AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((..((((..(((.....)))..))))(((.(((((..((((....))))(((.((((((....(((...))).....)))))))))))))).)))..)))))))........ ( -40.30)
>DroSec_CAF1 10702 120 + 1
AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCUGAAAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((.((((((((((...(((((((....((.((....))))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ ( -37.60)
>DroSim_CAF1 10655 120 + 1
AAGAUGCGUCUGGUGGAACAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((.((((((((((...(((((((......(((.....)))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ ( -39.40)
>DroEre_CAF1 10591 120 + 1
AAGAUGCGUCUGGUGGAGCAUCAGUUACGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((((((((...))))))..........(((.(((((..((((....))))(((.((((((....(((...))).....)))))))))))))).)))..)))))))........ ( -35.50)
>DroYak_CAF1 11847 120 + 1
AAGAUGCGUCUGGUGGAGCAUCAAUUGCGACAUCGCGCUGAAAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCGCUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((.(((((((((.(((..((((....)))).)))...((((((((.(((...))).)))...))))))))..)))))).((((((....)).))))..)))))))........ ( -38.90)
>consensus
AAGAUGCGUCUGGUGGAGCAUCAAUUGCGUCAUCGCGCCGAGAAGGCAUACAAAUGCGAUAUCUGUUCAAUGCCACUGGCCACCAAGCAGGAUCUCUCGCUGCACAUGCGUCAUCACAAG
..(((((((.((((((((((...(((((((......(((.....)))......)))))))...)))))...(((...)))))))).((((((....)).))))..)))))))........ (-37.30 = -37.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:49 2006