| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,578,902 – 15,579,006 |
| Length | 104 |
| Max. P | 0.653045 |
| Location | 15,578,902 – 15,579,006 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.69 |
| Mean single sequence MFE | -49.55 |
| Consensus MFE | -28.72 |
| Energy contribution | -30.11 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15578902 104 + 23771897 GCAGC-AGCC----------GCCGCUGCCAUCACAGCCGCCGUGGCGGCACUGUAACUGGGCAGCGAUGAGGUGGGCGAGGAGUUGCCACAAUUGCAGGUGGUCGAGGCCAGCGA ((.((-.(((----------..(((((((...((((((((....)))))..))).....)))))))....)))..))..((..(((((((........)))).)))..)).)).. ( -45.90) >DroVir_CAF1 37965 103 + 1 GCAGUGUGCCGUUGG------------CCAUAGCGGCUGCCGUGGCAGCACUGUAGCUGGGCAGCGAGCCGGUGGGCGAGGAGCCACCACAACUGCAGGUGAUGGAGUUCAGUGA ((((((((((((((.------------...)))))))(((....)))))))))).(((((((.....)))(((((.(.....))))))..((((.((.....)).)))))))).. ( -43.20) >DroPse_CAF1 41562 104 + 1 GCAGC-UGCC----------GCCAAGGCCAUGGCGGCCGCUGUGGCAGCACUGUAGCUGGGCAGCGUGGAGGUGGGCGAGGCAUUGCCGCAGUUGCAGGUGGCCGAGUUGAGCGA ((.((-((((----------((...((((.....))))...))))))))....(((((.(((.((.((.((.(((((((....))))).)).)).)).)).))).))))).)).. ( -54.90) >DroYak_CAF1 3406 104 + 1 GCAGC-CGCC----------GCCGCUGCCAUCGCGGCCGCUGUGGCGGCACUGUAACUGGGCAGCGAUGAGGUGGGCGAGGAGUUGCCACAAUUGCAGGUGGUCGAGGCCAGCGA ((.((-((((----------((.((.(((.....))).)).)))))))).((((((.((((((((..(..(.....)..)..)))))).)).)))))).((((....)))))).. ( -51.50) >DroMoj_CAF1 43692 115 + 1 GCUGCGAGCCACUGGCGCUGGCCGCCACCAUGGCAGCUGCUGUGGCGGCACUGUAGCUGGGCAGCGAGCCAGUGGGCGAGGAGCCGCCACAAUUGCAGGUGAUGGAGGUAAUUGA .((((((..(((((((((((.(((((.....)))((((((.(((....))).)))))))).))))..)))))))((((......))))....))))))................. ( -55.00) >DroAna_CAF1 2164 104 + 1 GCAGC-UGCA----------GCCACCGCCAUGGCAGCCGCUGUGGCGGCACUAUAACUUGGCAGCGAGGACGUGGGCGAGGAGUUGCCGCAAUUGCAGGUGGUCGAGGCUAUGGA ..(((-(.(.----------((((((((((((((....))))))))((((((....((((.(.(((....))).).)))).)).))))((....)).)))))).).))))..... ( -46.80) >consensus GCAGC_UGCC__________GCCGCCGCCAUGGCAGCCGCUGUGGCGGCACUGUAACUGGGCAGCGAGGAGGUGGGCGAGGAGUUGCCACAAUUGCAGGUGGUCGAGGCCAGCGA ((.....))...........(((.(.(((((....(((((....))))).((((((.((((((((.................)))))).)).))))))))))).).)))...... (-28.72 = -30.11 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:43 2006