| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,572,561 – 15,572,651 |
| Length | 90 |
| Max. P | 0.958310 |
| Location | 15,572,561 – 15,572,651 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 69.34 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -12.21 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15572561 90 + 23771897 GAAUGCCAUUGAUCAU--CGGCAGUUUUGCAUUUUGCAUUA-UAGUUAAAUCUCUGUAGAUUUUGACGGCCCCUCUUGAAAACCAUCAUACAU ............(((.--.(((.((..(((.....)))..)-).(((((((((....))).)))))).))).....))).............. ( -12.40) >DroEre_CAF1 35193 89 + 1 AAAUGCUACUGAUCCAGCUGGCCGGUGU---GUUUAUCUGGCCAGUUAAAUCUCUGGAGAUUUCGGUGGCUUC-CCAAAAUAACAUCAUACAU ....((((((((...((((((((((...---......)))))))))).(((((....)))))))))))))...-................... ( -29.90) >DroYak_CAF1 54859 86 + 1 CAAUGCUACUGAUCUUACUGACCGCA-----UUUUAUCUGG-CAGUUAAAUCUCUAGAGAUUUCGGUGGCCUU-CCCAAAUAACAUCAUACAU ....((((((((....((((.(((..-----.......)))-))))..(((((....)))))))))))))...-................... ( -17.40) >consensus AAAUGCUACUGAUCAU_CUGGCCGCU_U___UUUUAUCUGG_CAGUUAAAUCUCUGGAGAUUUCGGUGGCCUC_CCAAAAUAACAUCAUACAU ....((((((((....((((.((((............)))).))))..(((((....)))))))))))))....................... (-12.21 = -12.33 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:40 2006