| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,560,577 – 15,560,672 |
| Length | 95 |
| Max. P | 0.987628 |
| Location | 15,560,577 – 15,560,672 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -21.16 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15560577 95 + 23771897 GCCCUGGCCAGCAGGGAAUUGGUUUCAUUUGAGGUCAGGGCUAUGCUCUUACCCUAAAAUACUUUGCUGCCCAGUUUAUAAAG----------AAGA---UUCGCUG-----------U ((.((((.((((((((....(..(((....)))..)((((.((......))))))......)))))))).))))........(----------(...---.))))..-----------. ( -25.60) >DroSec_CAF1 23130 105 + 1 ACACUGGCCAGCAGGGAAUUGGUUUUAUUUGAGGUCAGGGCUCCGCUCUUAUCCUAAAAUACUUUGCUGCCCAGUUUAUAACGAACUCUGGAUAAGA---UUCGUUG-----------U ..(((((.((((((((.........(((((.(((..(((((...)))))...))).))))))))))))).)))))..((((((((.(((.....)))---)))))))-----------) ( -34.30) >DroSim_CAF1 23606 105 + 1 ACACUGGCCAGCAGGGAAUUGGUUUUAUUUGAGGUCAGGGCUCUGCUCUUAUCCUAAAAUGCUUUGCUGCCCAGUUUAUAACGAACUUUGGAUAAGA---UUCGUUG-----------U ..(((((.((((((((.....((((((..((((..(((....)))..))))...)))))).)))))))).)))))..(((((((((((.....))).---)))))))-----------) ( -33.10) >DroYak_CAF1 43518 115 + 1 ACACUGGUCACCAGGGAAUUGGUUUCCUUGGGGGUCAGGGCACUGCUCUUAUCCGAAAACACUUUG---CCCAGUUAAUAA-GAACUUUGGAUAAGAGCGUAUGUUGGCCCGUUGAUUU .....(((((((((((((.....))))))))(((((((.(.((.(((((((((((((....(((..---..........))-)...))))))))))))))).).)))))))..))))). ( -44.60) >consensus ACACUGGCCAGCAGGGAAUUGGUUUCAUUUGAGGUCAGGGCUCUGCUCUUAUCCUAAAAUACUUUGCUGCCCAGUUUAUAACGAACUUUGGAUAAGA___UUCGUUG___________U ..(((((.((((((((...((..(((....)))..))((((...)))).............)))))))).)))))............................................ (-21.16 = -21.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:18 2006