| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,628,457 – 1,628,553 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 1,628,457 – 1,628,553 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.71 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -16.85 |
| Energy contribution | -16.80 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1628457 96 + 23771897 CUCGCCGACUUCGACUCGAAGUUGGUCAGCAUGGUGGCACUUUUU-CUGUUCUGCCUGUA--------GGUGUCUCAAAUUGGAUGCACUUCUAGGUGUCGGCUU ...((((((...(((..((((..(((((......)))).)..)))-).)))..(((((.(--------(((((.((......)).)))))).))))))))))).. ( -31.50) >DroVir_CAF1 3742 91 + 1 CGAGCCGACUUCGACUCGAAAUUGGUCAACAUGUUGGCAAAGUCUUUUGUUUUUCCUGCUGCCGUGGCGAUGUCUCA-GUUGU-------------AGUCGGCUU .(((((((((.(((((.((.((..(((..((((..((((.................))))..))))..))))).)))-)))).-------------))))))))) ( -30.73) >DroSec_CAF1 3730 96 + 1 CUCGCCGACUUCGACUCGAAGUUGGUCAGCAUGGUGGCACUUUUU-CUGUUCUGCCUGUA--------GGUGUCUCAAAUUGGAUGCUCUUCUAGGUGUCGGCUU ...((((((.....((.((((.......(((.((..(.((.....-..)).)..))))).--------(((((((......))))))))))).))..)))))).. ( -28.80) >DroSim_CAF1 3083 96 + 1 CUCGCUGACUUCGACUCGAAGUUGGUCAGCAUGGUGGCACUUUUU-CUGUUCUGCCUGUA--------GGUGUCUCAAAUUGGAUGCUCUUCUAGGUGUCGGCUU ...((((((.....((.((((.......(((.((..(.((.....-..)).)..))))).--------(((((((......))))))))))).))..)))))).. ( -26.60) >DroYak_CAF1 3729 96 + 1 CUCGCCGACUUCGACUCGAAGUUGGUCAGCAUGCUGGCACUUUUU-CUGUUCUGCCUGUA--------GGUGUCUCAAAUUGGUUGCUGUUCUACGUGUCGGCUU ((.((((((((((...)))))))))).))...((((((((.....-..(.....)..(((--------((.((..(......)..))...))))))))))))).. ( -28.80) >DroAna_CAF1 3730 92 + 1 CGCGCUGACUUCGACUCGAAGUUGGUCAGCAUGUUGGCACUUUUU-CCA--CGAUCGUUU--------CGUGUCUCAAUUA--CUUUUCCUGUGGGUGUCGGCUU ...((((((..((((.....))))))))))..(((((((((....-.((--(((.....)--------)))).......((--(.......)))))))))))).. ( -29.10) >consensus CUCGCCGACUUCGACUCGAAGUUGGUCAGCAUGGUGGCACUUUUU_CUGUUCUGCCUGUA________GGUGUCUCAAAUUGGAUGCUCUUCUAGGUGUCGGCUU ...((((((...((((.......))))........(((((.............................))))).......................)))))).. (-16.85 = -16.80 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:28 2006