| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,506,025 – 15,506,115 |
| Length | 90 |
| Max. P | 0.747185 |
| Location | 15,506,025 – 15,506,115 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -14.23 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15506025 90 + 23771897 ----GACUAUUGCAAAUUUAGCUCGCUCCAGCGACACAAUUUCUAUGCCAAAAGUCCAAACAUAUGGCGAGCCAGCGAAAGAGCAAAAAAAAAC ----.....((((.......((((((....))..............((((...((....))...))))))))...(....).))))........ ( -17.60) >DroEre_CAF1 17045 86 + 1 ----GACUAUUGCAAAUUUAGCUCGCUCCAGCGACACAAUUUCUAUGCCAAAAGUCCAAACAUAUGGCGAGCCAGCGAAAGAGCAAAAA----A ----.....((((.......((((((....))..............((((...((....))...))))))))...(....).))))...----. ( -17.60) >DroYak_CAF1 17089 86 + 1 ----GGCUAUUGCAAAUUUAGCUCGCUCCAGCGACACAAUUUCUAUGCCAAAAGUCCAAACAUAUGGCGAGCCAGCGAAAGAGCAGAAA----A ----((((............(.((((....)))))..........(((((...((....))...))))))))).((......)).....----. ( -18.10) >DroAna_CAF1 16634 87 + 1 UAGCAACUAUUGCAAAUUUAGCUCGCUCCAGCGACACAAUUUCUAUGCCAAAAGUCCAAACAUAUGGCAGGC-----AGUGGGCAAAAAAAA-- ..((..(((((((.......(.((((....)))))..........(((((...((....))...))))).))-----)))))))........-- ( -20.40) >consensus ____GACUAUUGCAAAUUUAGCUCGCUCCAGCGACACAAUUUCUAUGCCAAAAGUCCAAACAUAUGGCGAGCCAGCGAAAGAGCAAAAA____A .........((((.......(.((((....)))))..........(((((...((....))...))))).............))))........ (-14.23 = -13.85 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:43 2006