| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,500,587 – 15,500,707 |
| Length | 120 |
| Max. P | 0.781505 |
| Location | 15,500,587 – 15,500,707 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -39.77 |
| Consensus MFE | -37.69 |
| Energy contribution | -37.80 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15500587 120 - 23771897 GUGCGACUGCAGCCAAAAACGGUACUAAACUAAAUGUCGGUGAAAUUCUUGUGAAUGCGAACGAACGAAUCGAAACGUCAGUCCUCUGCUGACGUCGCUGCCGCCGCUCAGUCGCUCUCU (.(((((((.(((.......(((.....))).......((((..((((....))))((((.(((.....)))...(((((((.....)))))))))))...)))))))))))))).)... ( -39.30) >DroSec_CAF1 41817 120 - 1 GUGCGACUGCAGCCAAAAACGGUACUAAACUAAAUGUCGGUGAAAUUCUUGUGAAUGCGAACGAACGAAUCGAAACGUCAGCCCUCUGCUGACGUCGCUGCCGCUGCUCUGUCGCUCUCU (.(((((.(((((.......(((.....))).......(((...((((....))))((((.(((.....)))...(((((((.....))))))))))).))))))))...))))).)... ( -40.00) >DroSim_CAF1 42048 120 - 1 GUGCGACUGCAGCCAAAAACGGUACUAAACUAAAUGUCGGUGAAAUUCUUGUGAAUGCGAACGAACGAAUCGAAACGUCAGCCCUCUGCUGACGUCGCUGCCGCUGCUCUGUCGCUCUCU (.(((((.(((((.......(((.....))).......(((...((((....))))((((.(((.....)))...(((((((.....))))))))))).))))))))...))))).)... ( -40.00) >consensus GUGCGACUGCAGCCAAAAACGGUACUAAACUAAAUGUCGGUGAAAUUCUUGUGAAUGCGAACGAACGAAUCGAAACGUCAGCCCUCUGCUGACGUCGCUGCCGCUGCUCUGUCGCUCUCU (.(((((.(((((.......(((.....))).......(((...((((....))))((((.(((.....)))...(((((((.....))))))))))).))))))))...))))).)... (-37.69 = -37.80 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:39 2006