Locus 5625

Sequence ID 3L_DroMel_CAF1
Location 15,440,694 – 15,440,788
Length 94
Max. P 0.897976
window8885

overview

Window 5

Location 15,440,694 – 15,440,788
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 92.53
Mean single sequence MFE -29.87
Consensus MFE -25.16
Energy contribution -25.68
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.84
SVM decision value 1.00
SVM RNA-class probability 0.897976
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15440694 94 - 23771897
---CUUUUGGGCAAUCACGAACAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCUGG
---.....((((.....((.....))......(((((.((((((((((..((..((((......))))..))...)))))))))))))))))))... ( -28.00)
>DroSec_CAF1 171987 93 - 1
---CUU-UGGGCAAUCACGAGCAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG
---...-(((((.....((((......)))).(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -30.50)
>DroSim_CAF1 173728 93 - 1
---CUU-UGGGCAAUCACGAGCAACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG
---...-(((((.....((((......)))).(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -30.50)
>DroEre_CAF1 168454 90 - 1
---CUU-UGGGCAAUCACGA---ACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG
---...-(((((..(((.(.---....).)))(((((.((((((((((..((..((((......))))..))...))))))))))))))))).))). ( -27.90)
>DroYak_CAF1 174054 90 - 1
---CUU-UGGGCAAUCACGA---ACGACUUGAGCGCCCUUGAUUGACGUUCGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCGGG
---..(-((..(......).---.)))(((((((((((((((((((((..((((((((......))))...)))))))))))))))).))))))))) ( -34.40)
>DroAna_CAF1 310277 92 - 1
GGUCUU-U-GGAAAUCACGA---ACGACUUAAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGUGUGUG
((((((-(-(.......)))---).))))...(((((.((((((((((..((..((((......))))..))...)))))))))))))))....... ( -27.90)
>consensus
___CUU_UGGGCAAUCACGA___ACGACUUGAGCGCCAUUGAUUGACGUUUGAUUGAGAAUUACCUUAGCCAUUGUGUCAAUCAAGGUGUGCUCCGG
........((((.....((.....))......(((((.((((((((((..((..((((......))))..))...)))))))))))))))))))... (-25.16 = -25.68 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:53 2006