Locus 5620

Sequence ID 3L_DroMel_CAF1
Location 15,415,331 – 15,415,425
Length 94
Max. P 0.958557
window8879

overview

Window 9

Location 15,415,331 – 15,415,425
Length 94
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 79.37
Mean single sequence MFE -39.44
Consensus MFE -18.80
Energy contribution -20.48
Covariance contribution 1.68
Combinations/Pair 1.08
Mean z-score -2.55
Structure conservation index 0.48
SVM decision value 1.49
SVM RNA-class probability 0.958557
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15415331 94 - 23771897
CGUCU--------UCACAACCUGGCAACUUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU------GAGGAAGAUGC-GGAA
.(((.--------.........)))...((((((((((..(((-------(.((.(((.((.((((.(((......)))))))))))).)))))------)...)))))))-))). ( -37.20)
>DroSec_CAF1 144418 95 - 1
GGUGU--------UAGCGUAUUCUCAAUUUUGCAUCUUUUCAU-------CUAGGAUCUAGACAUCGCGUUCAAUUGCGGAUUCGCAUGCGGAU------GAGGCAGAUGCCGCAA
.....--------..(((.............((((((((((((-------((.((((((.(....)(((......)))))))))(....)))))------)))).))))))))).. ( -24.11)
>DroSim_CAF1 147957 94 - 1
CGUCU--------UCGCAUCCUGGCAACUUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU------GAGGAAGAUGC-GGAA
(((((--------((.(((((..(((..(((((((((..(((.-------..((((.(.((....)).).)))).)))))))))))))))))))------)..))))))).-.... ( -40.50)
>DroEre_CAF1 145221 102 - 1
CAUCCUCCCGUCUUCGCAUCCUGGCAACCUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGCUGCGGAUGCGGAUGCGGAU------GAGCAAGAUGC-GGAA
.....((((((((((.(((((.(....)...((((((..((((-------((((((.(.((....)).).))))....))))))))))))))))------).).)))))).-))). ( -41.20)
>DroYak_CAF1 148946 115 - 1
CGUCUUCGCAACUUCGCAUCCUGGCAACCUCGCAUCUUAGCAUCUCGCAUCUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAUGAGGAUGAGGAAGAUGC-GGAA
....((((((.((((.(((((((....).((((((((..(((((.((((...((((.(.((....)).).)))).)))))))))))))))))...))))))..)))).)))-))). ( -54.20)
>consensus
CGUCU________UCGCAUCCUGGCAACUUCGCAUCUUAGCAU_______CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU______GAGGAAGAUGC_GGAA
.............((((((((.(....)...((((((..(((..........((((.(.((....)).).)))).)))))))))))))))))........................ (-18.80 = -20.48 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:47 2006