| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,614,009 – 1,614,100 |
| Length | 91 |
| Max. P | 0.904359 |
| Location | 1,614,009 – 1,614,100 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 82.64 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1614009 91 - 23771897 CCGGAGUCCUUUUGGGCGGCGGAGUAAUUCCGAAGUAAUUCCCGUCUACCAAGACGGACACACAAAACAAAGAAAAACUCUAUAAGAAUCC ..(((((((....))))...(((((..(((.(((....)))((((((....))))))..............)))..))))).......))) ( -23.90) >DroEre_CAF1 7135 81 - 1 CCGGAGUCCUUU-GGGCGACGGAGCAA-------UUAAAUUCCGUCUGGCAAGACGGACACACAAAACAAAGAAAAAC--UAUAAGAAUCC (((..((((...-))))..))).....-------......(((((((....)))))))....................--........... ( -20.90) >DroYak_CAF1 7181 79 - 1 CCGGAGUCCUUU-UGGCGGCGAAGCAU-------GUAAUUCCCGUCU----AGACGGACACACAAAACAAAGAAAAACUCUAUAAGAAUCC ..(((((((.((-((((((.(((....-------....)))))).))----))).))))...........(((.....))).......))) ( -19.20) >consensus CCGGAGUCCUUU_GGGCGGCGGAGCAA_______GUAAUUCCCGUCU__CAAGACGGACACACAAAACAAAGAAAAACUCUAUAAGAAUCC (((..((((....))))..)))...................((((((....)))))).................................. (-15.40 = -16.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006