| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,381,248 – 15,381,341 |
| Length | 93 |
| Max. P | 0.745417 |
| Location | 15,381,248 – 15,381,341 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.45 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -14.01 |
| Energy contribution | -15.68 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15381248 93 + 23771897 UGCAACAAUGGCAACAGA----------------ACUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGCAUUUGGCAAACGUUGCGUAUACGCAACGUGCU--CCGC---- .((..(((((....)(((----------------(....))))))))...(((((((((.(((......))))).)))))))((((((((....)))))))))).--....---- ( -26.50) >DroPse_CAF1 113328 93 + 1 UACAACAAUGGCAGCA-A----------------ACUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGCAUUUGCCAAACGUUGCGUAUACGCAAUGUGCCUGCCG----- .........((((((.-.----------------..................((.((((.(((......))))))).))...((((((((....))))))))).))))).----- ( -26.70) >DroWil_CAF1 120843 86 + 1 AGCAACAACAGC-----A----------------ACUAAUUCUAUUGACUUUACUAAUGACGUAAUUAAGCGCAUUUGGCAAACGUUGCGUAUACGCAAUGUGUU--UU------ .((..(((.((.-----.----------------.......)).)))......(.((((.(((......))))))).)))..((((((((....))))))))...--..------ ( -16.50) >DroMoj_CAF1 109320 102 + 1 AGCAGCAAUAGCAGCAGAGACAAUUGCAACAACGGCUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGCAUUUGGCCUGCGCUGCGUAUACGCA---------ACAU---- (((.((....)).((((.(.(((.(((..(((..(......)..))).....((((((......))).)))))).))).))))))))(((....))).---------....---- ( -24.70) >DroAna_CAF1 259601 92 + 1 UACAACAAUGCCAAC-GA----------------ACUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGCAUUUGGCAAACGCUGCGUAUACGCAAUGUGCU--CCGG---- ..............(-(.----------------................(((((((((.(((......))))).)))))))(((.((((....)))).)))...--.)).---- ( -17.50) >DroPer_CAF1 112564 98 + 1 UACAACAAUGGCAGCA-A----------------ACUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGAAUUUGCCAAACGUUGCGUAUACGCAAUGUGCCUGCCGCUGCC .........((((((.-.----------------...............(((((((((......))).))))))...((...((((((((....))))))))....)).)))))) ( -28.50) >consensus UACAACAAUGGCAGCA_A________________ACUAAUUCUAUUGACUUUGCUAAUGACGUAAUUAAGCGCAUUUGGCAAACGUUGCGUAUACGCAAUGUGCU__CCG_____ .....((((((..............................))))))...(((((((...(((......)))...)))))))((((((((....))))))))............. (-14.01 = -15.68 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:34 2006