| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,364,991 – 15,365,088 |
| Length | 97 |
| Max. P | 0.523251 |
| Location | 15,364,991 – 15,365,088 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.94 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -15.67 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15364991 97 - 23771897 UUAAGCAAGCUGCAUUUAAUAUUGUUCACCAAAGGUGGAAUUCAAUUAACUAUAGAAUUAGGAAAAACUAUUUUAAGAAAAGCGAAUAGUAAGCCAA ....((.....))......((((((((.(((....)))...........((.((((((.((......))))))))))......))))))))...... ( -12.80) >DroSec_CAF1 96765 96 - 1 UUAGGCAAGCUGCAUUUAAUAUUGUUCACCAAAGGUGGAAUUCAAUUAACUAUAGAAAUAGGAAAAACUAUUUUAAGA-AAGCGAAUAGUAAGCCAA ...(((..((((...(((((....((((((...)))))).....))))).....(((((((......)))))))....-.......))))..))).. ( -18.90) >DroSim_CAF1 98841 97 - 1 UUAGGCAAGCUGCAUUUAAUAUUGUUCACCAAAGGUGGAAUUCAAUUAACUAUAGAAAUAGGAAAAACUAUUUUAAGAAAAGCGAAUAGUAAGCCAA ...(((..((((...(((((....((((((...)))))).....))))).....(((((((......)))))))............))))..))).. ( -18.90) >consensus UUAGGCAAGCUGCAUUUAAUAUUGUUCACCAAAGGUGGAAUUCAAUUAACUAUAGAAAUAGGAAAAACUAUUUUAAGAAAAGCGAAUAGUAAGCCAA ...(((..((((...(((((....((((((...)))))).....))))).....(((((((......)))))))............))))..))).. (-15.67 = -16.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:21 2006