| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,611,912 – 1,612,004 |
| Length | 92 |
| Max. P | 0.818505 |
| Location | 1,611,912 – 1,612,004 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -24.82 |
| Energy contribution | -26.27 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1611912 92 + 23771897 GCCACCGAUUGCGUUUCCGAAUUCGAGAC-CAGGUCCGCCGAUUCGGAUUCGGAAUAGAAGUCGGAAUCGGAUACACUCGGCACACCGUGCAA (((.((((((....(((((((((((((..-..((....))..)))))))))))))....))))))....(....)....)))........... ( -33.30) >DroEre_CAF1 4917 84 + 1 GCCGCCGCUUGCGAUUCCGAAUUCAAGUCCCAGGG---CCGACUCGGAUUCGGAA------UCGGAAUCGGAUACACUGGGCACACCGUGCAG ....(((.((.(((((((((((((.((((......---..)))).))))))))))------))).)).))).....(((.((.....)).))) ( -34.90) >DroYak_CAF1 4901 83 + 1 GCCGCCGAUUGCAAUUCCGAAUUCAAGUC-CAGGU---CCGAUUCGGAUUCGGAU------UCGGAAUCGGUUACACUGGGCACACCGUGCAA ...(((((((.(...(((((((((.((((-.....---..)))).))))))))).------..).)))))))..(((.((.....)))))... ( -29.00) >consensus GCCGCCGAUUGCGAUUCCGAAUUCAAGUC_CAGGU___CCGAUUCGGAUUCGGAA______UCGGAAUCGGAUACACUGGGCACACCGUGCAA ....((((((.(((((((((((((.((((...((....)))))).))))))))))......))).)))))).........((((...)))).. (-24.82 = -26.27 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:21 2006