Locus 5596

Sequence ID 3L_DroMel_CAF1
Location 15,355,095 – 15,355,201
Length 106
Max. P 0.786169
window8846

overview

Window 6

Location 15,355,095 – 15,355,201
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.84
Mean single sequence MFE -22.72
Consensus MFE -16.00
Energy contribution -16.88
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.65
Structure conservation index 0.70
SVM decision value 0.57
SVM RNA-class probability 0.786169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15355095 106 - 23771897
CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGAUUAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA
.........((((((((......))))))))..((((((((((........))))).((..(((((..((..(((......)))...))..)))))))..))))). ( -23.20)
>DroSec_CAF1 87054 106 - 1
CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGCAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA
...(((((.((((((((......))))))))(((((..(((((........)))))....(((......))))))))................)))))........ ( -23.70)
>DroSim_CAF1 89036 106 - 1
CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA
.........((((((((......))))))))..((((((((((........)))))..((((((((..((..(((......)))...))..))).)))))))))). ( -24.50)
>DroEre_CAF1 87223 103 - 1
CCCGAAAUGCGCUUUCUUC-CCCAGAAAA-GGGGAAAAUGGGCAUUUCCCCACCCUCUUUCCAGUU-UUUUCUGCCUCUCUGCACAUAAUCAAGUUUCAAUUUCCA
...(((((((.(....(((-(((......-))))))...).))))))).............(((..-....)))................................ ( -21.20)
>DroYak_CAF1 89908 105 - 1
CCCGAAACACGCUUUCUUCGCCCAGAAAAUGAGGGAAAUGGCCAUUUCCCCACCCUCGUUGAACUU-UUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA
...(((((..((.......)).(((((((((((((...(((........)))))))))))(((...-..))).....)))))...........)))))........ ( -21.00)
>consensus
CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA
...(((((..(((((((......)))))))(((((....(((......))).)))))...............(((......))).........)))))........ (-16.00 = -16.88 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:15 2006