Locus 5595

Sequence ID 3L_DroMel_CAF1
Location 15,353,083 – 15,353,185
Length 102
Max. P 0.580308
window8845

overview

Window 5

Location 15,353,083 – 15,353,185
Length 102
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.04
Mean single sequence MFE -19.42
Consensus MFE -10.87
Energy contribution -11.53
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.56
SVM decision value 0.09
SVM RNA-class probability 0.580308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15353083 102 - 23771897
-----CU--------UUUUUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU
-----..--------......(((.(((.(....(((((((((((.(((...)))((((.(((((.......))))).))))......))).))))))))....).)))..))). ( -20.40)
>DroPse_CAF1 87303 85 - 1
---------------CUUUUUGUUUGGCGGUUAUGAAAUUUUGCUUGAGCAUCUAGU-AUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUU--------------
---------------.......((((.(((((((((((...(((....)))......-..(((((.......))))).))))))))))).)))).......-------------- ( -18.70)
>DroSec_CAF1 85125 100 - 1
-----CU--------U--UUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU
-----..--------.--...(((.(((.(....(((((((((((.(((...)))((((.(((((.......))))).))))......))).))))))))....).)))..))). ( -20.40)
>DroEre_CAF1 85203 99 - 1
------CU-------UUUUUCGUCUGGCGGUCAUGAAAU-UUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUU--UUUCGUUCUUGGCU
------..-------......(((.(((((....((..(-(((((.(((...)))((((.(((((.......))))).))))......))))))..)).--..)))))...))). ( -17.80)
>DroAna_CAF1 81073 114 - 1
UCAUUCUUUUUUUCAUUUUUUGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCCAGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAACUUCU-UUUCGGUCUCGGCU
.....................(((.(((.(....(((.(((((((..(((((...((((.(((((.......))))).)))).)))))))))))).))).-...).)))..))). ( -20.50)
>DroPer_CAF1 86738 85 - 1
---------------CUUUUUGUUUGGCGGUUAUGAAAUUUUGCUUGAGCAUCUAGU-AUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUU--------------
---------------.......((((.(((((((((((...(((....)))......-..(((((.......))))).))))))))))).)))).......-------------- ( -18.70)
>consensus
______U________UUUUUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUAGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU
........................((.((((.((((((..((((..(((.(((.........))).)))....)))).)))))).)))).))....................... (-10.87 = -11.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:14 2006