| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,322,959 – 15,323,051 |
| Length | 92 |
| Max. P | 0.654131 |
| Location | 15,322,959 – 15,323,051 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -13.67 |
| Consensus MFE | -9.10 |
| Energy contribution | -9.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15322959 92 + 23771897 AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCCAUUGGCAGAAGGCCAACAAACCUCAA--------AAAAGGGUA---------ACAU-----------CAACAAAGACAACA ....(((((((((.(((.......................(((((.....)))))...((((...--------....)))).---------))))-----------))).)))))..... ( -14.10) >DroPse_CAF1 56657 103 + 1 AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCUAUUGGCACAAGGCCAACAAACCCCGA--------AAAGCAACA---------AAAUAGCCAACCAACCAACAAAAACGGCU .....(((((((..(((((.((((............)))).)))))...((........)).)))--------)))).....---------....((((.................)))) ( -14.53) >DroEre_CAF1 55320 92 + 1 GAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCCAUUGGCAGAAGGCCAACAAACCCCAA--------AAAAGGGUA---------ACAA-----------CAACAAGGACAACA .....((((((.(((............))).))))))((.(((((.....)))))...((((...--------....)))).---------....-----------......))...... ( -15.40) >DroYak_CAF1 56897 92 + 1 AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCCAUUGGCAAAAGGCCAACAAACCUCAA--------AAAAGAGUA---------ACAU-----------CGACAAAAACAACA ..(((((((((((...(((..........)))........(((((.....)))))......)).)--------)))))))).---------....-----------.............. ( -12.50) >DroAna_CAF1 52586 107 + 1 AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCCAUUGGCACAAGGCCAACAAACCUCAAACCAGAAAAAAAGGAUACGUACAACAACAU-----------CACGAACGGCA--A ..((((.....)))).....................(((.(((((.....)))))....(((..............)))................-----------.......))).--. ( -13.44) >DroPer_CAF1 55464 103 + 1 AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCUAUUGGCACAAGGCCAACAAACCCCGA--------AAACCAACA---------AAAUAGCCAACCAACCAACAAAAACGGCU .....((((((.(((............))).))))))...(((((.....)))))..........--------.........---------....((((.................)))) ( -12.03) >consensus AAAUUCUUUUUGAAUGUCAUUAGUAUAAUUGAAAAAGCCAUUGGCACAAGGCCAACAAACCCCAA________AAAAGAAUA_________ACAU___________CAACAAAAACAACA .....((((((.(((............))).))))))...(((((.....)))))................................................................. ( -9.10 = -9.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:03 2006