Locus 5585

Sequence ID 3L_DroMel_CAF1
Location 15,319,523 – 15,319,618
Length 95
Max. P 0.769170
window8832

overview

Window 2

Location 15,319,523 – 15,319,618
Length 95
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 83.37
Mean single sequence MFE -29.86
Consensus MFE -19.78
Energy contribution -22.10
Covariance contribution 2.32
Combinations/Pair 1.06
Mean z-score -2.04
Structure conservation index 0.66
SVM decision value 0.52
SVM RNA-class probability 0.769170
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15319523 95 - 23771897
AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU
..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50)
>DroSec_CAF1 51540 95 - 1
AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU
..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50)
>DroSim_CAF1 52147 95 - 1
AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU
..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50)
>DroYak_CAF1 49253 95 - 1
AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUUUUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU
..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50)
>DroAna_CAF1 49105 83 - 1
AUGACAAGUCAAGUCAUUAUCAUUCCGCCAGCU-----A-------GAGUGGGUGGCCCAGG------ACUUCUCGGCCGUGGCCGCCUCUUCAUUUGUCU
..(((((((.(((.......(((((........-----.-------)))))(((((((..((------.((....))))..))))))).))).))))))). ( -27.30)
>consensus
AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC______GACUCCCUUCCAUUUGUCU
..(((((((..((((.....((((((((((((....))))..))).)))))((.((((((....)))))).)).........)))).......))))))). (-19.78 = -22.10 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:01 2006