Locus 5569

Sequence ID 3L_DroMel_CAF1
Location 15,259,732 – 15,259,840
Length 108
Max. P 0.554356
window8809

overview

Window 9

Location 15,259,732 – 15,259,840
Length 108
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 84.12
Mean single sequence MFE -32.40
Consensus MFE -19.58
Energy contribution -19.50
Covariance contribution -0.08
Combinations/Pair 1.16
Mean z-score -1.99
Structure conservation index 0.60
SVM decision value 0.04
SVM RNA-class probability 0.554356
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15259732 108 + 23771897
GCCAGAACGGCCAGCGAUGAUUGCCAUGGCUUCGGCGGGCGAAU----AUGCGAAUAUGCGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
(((.....))).((((((.(((((((((((....))..(((.((----.(((......))).)).))).))))))))).)))...)))..((((((....))).)))..... ( -31.70)
>DroSec_CAF1 148870 100 + 1
GCCAGAACGGCCAGCGAUGAUUGCCAUGGAUUCGCCGGGCAUAU----AUGCG--------AAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
(((.....))).((((((.(((((((((.((((((.........----..)))--------))).....))))))))).)))...)))..((((((....))).)))..... ( -29.90)
>DroSim_CAF1 157141 108 + 1
GCCAGAACGGGCAGCGAUGAUUGCCAUGGCUUCGCCGGGCAUAU----AUGCGAAUAUGCGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
....(((..((((..(((.(((((((((((...)))..((((((----.(((......))).))))))..)))))))).)))..))))..((((((....))).))).))). ( -35.50)
>DroYak_CAF1 155336 106 + 1
GCCAGAACGG----CGAUGAUUGCCAUGGCUUCGUCGGGCGAAAUCGAAUGCGAAUA--UGUAUAUGGCCAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
(((.....))----)(((.(((((((((((((((.((..((....))..)))))...--.......)))))))))))).)))........((((((....))).)))..... ( -38.00)
>DroAna_CAF1 141047 96 + 1
GCCAGAACGG----CGAUGAUUGCUAUGGCUCCGCCAAGCGAAU----AU------A--UCUGUAUGUAUGUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
(((.....))----)((((.(((((.((((...)))))))))..----.)------)--))(((.((((..((((((((((....))).)))))))..)))).)))...... ( -26.90)
>consensus
GCCAGAACGG_CAGCGAUGAUUGCCAUGGCUUCGCCGGGCGAAU____AUGCGAAUA__CGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG
....(((........(((.((((((((((.....))..(((........)))..................)))))))).)))........((((((....))).))).))). (-19.58 = -19.50 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:38 2006