Locus 5561

Sequence ID 3L_DroMel_CAF1
Location 15,251,651 – 15,251,755
Length 104
Max. P 0.639229
window8796

overview

Window 6

Location 15,251,651 – 15,251,755
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 89.42
Mean single sequence MFE -26.43
Consensus MFE -20.18
Energy contribution -21.18
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 0.22
SVM RNA-class probability 0.639229
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15251651 104 - 23771897
CAAAUGUGAAUUUAGCGCAGGAGUUGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA
(((.((((.......))))....)))...............((((((....((.(((((((.....))))))).))...(((((....)))))))))))..... ( -29.00)
>DroSec_CAF1 140871 104 - 1
CAAAUGUGAAUUUAGCGCAGAAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA
....(((........((((.............)))).....((((((....((.(((((((.....))))))).))...(((((....)))))))))))))).. ( -28.02)
>DroSim_CAF1 149081 104 - 1
CAAAUGUGAAUUUAGCGCAGAAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA
....(((........((((.............)))).....((((((....((.(((((((.....))))))).))...(((((....)))))))))))))).. ( -28.02)
>DroEre_CAF1 141160 94 - 1
CAAAUAUGAAUUUAGCGCAGGAGUGGGGAUA---------AUGCUCCUUAAUUGCCA-UGAAAAGGUCAGCGGGGAGGUCAUUCGCAGGAGUGGAAGUACCGAA
......(((.((((..((((...((((((..---------....)))))).))))..-))))....))).(((.....((((((....)))))).....))).. ( -21.10)
>DroYak_CAF1 147207 94 - 1
CAAAUAUGAAUUUGGCGCAGGAGUGGGGAUA---------AUGCUCCUUAAUUGCCG-UGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGCAGUACGGAA
......(((.(((.((((((...((((((..---------....)))))).))).))-).)))...))).((.....(((((((....)))))))....))... ( -26.00)
>consensus
CAAAUGUGAAUUUAGCGCAGGAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA
.........................................((((((....((.(((((((.....))))))).))...(((((....)))))))))))..... (-20.18 = -21.18 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:26 2006