Locus 5541

Sequence ID 3L_DroMel_CAF1
Location 15,216,023 – 15,216,126
Length 103
Max. P 0.687918
window8757

overview

Window 7

Location 15,216,023 – 15,216,126
Length 103
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -24.28
Consensus MFE -22.46
Energy contribution -22.38
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.16
Structure conservation index 0.93
SVM decision value 0.32
SVM RNA-class probability 0.687918
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15216023 103 + 23771897
GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG
((((((((((.((((((.((((.((.((....))........--.......(....)..)).))))))))))...)))))((((((......))))))))))).. ( -24.40)
>DroSec_CAF1 105542 103 + 1
GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACGCUUACUUUGGUGG
((((((((((.((((((.((((.((.((....))........--.......(....)..)).))))))))))...)))))((((((......))))))))))).. ( -24.20)
>DroSim_CAF1 112903 102 + 1
GCCUAUUUGAAUUAGAGUCUGGGUU-ACUAAAGUAUAAAAAA--AAAGACACGGAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUAA
..........((((((((..((((.-................--.......(....)...((((.(((((.(....).))))).)).))))))..)))))))).. ( -22.20)
>DroEre_CAF1 105906 103 + 1
GCCAAUGCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAGAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGUCUACCCUUACUUUGGCGG
((((((....)))(((((..((((..................--.......(....)..(((((.(((((.(....).))))).)))))))))..)))))))).. ( -27.40)
>DroYak_CAF1 110135 105 + 1
GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAAUAUAAGACACGAAAGAAAGGCCAGUUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG
.(((((((......)))).)))....(((((((((............(((.(....).....((......))..)))......(((....))).))))))))).. ( -23.20)
>consensus
GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA__UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG
((((((((((.((((((.((((.((.((....)).................(....)..)).))))))))))...)))))((((((......))))))))))).. (-22.46 = -22.38 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:49 2006