Locus 5532

Sequence ID 3L_DroMel_CAF1
Location 15,189,899 – 15,189,992
Length 93
Max. P 0.889384
window8741

overview

Window 1

Location 15,189,899 – 15,189,992
Length 93
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.79
Mean single sequence MFE -26.61
Consensus MFE -13.36
Energy contribution -16.67
Covariance contribution 3.31
Combinations/Pair 1.07
Mean z-score -2.69
Structure conservation index 0.50
SVM decision value 0.96
SVM RNA-class probability 0.889384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15189899 93 - 23771897
GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA--AAUA
((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....--.... ( -31.80)
>DroSec_CAF1 79471 91 - 1
GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAACC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA----UA
((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....----.. ( -31.80)
>DroEre_CAF1 79427 93 - 1
GCUGUCAGAGCCCUGAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--CCGAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCCGAGA--AAUA
((((..(.(((((...(((((.(((((..((((---------(((((.........--))))))))))))))...)))))..))))).)..)))).....--.... ( -28.70)
>DroYak_CAF1 82502 93 - 1
GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCCGAGA--AAUA
((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....--.... ( -30.90)
>DroAna_CAF1 74296 91 - 1
GCUGUCAGAGGCCUAAAGGAAAAAUUAAUCAUA---------UUUGAUUCUGAGCUGGAGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGG----GA--AAGA
.(((.....((((((.(((((...(((((((((---------(....((((.....))))....)))))))))).))))).))))))....)))----..--.... ( -23.50)
>DroPer_CAF1 68889 90 - 1
GCUGUCAGAACCCUCAAAAAAUAAUUUAUCAUACCACAUAUUUUUGAUUCUGAGCU--AGAAAUAU-------------UGUGG-CAAUGCACACAGAUACAAACU
((..((((((...(((((((....................))))))))))))))).--.......(-------------(((((-(...)).)))))......... ( -12.95)
>consensus
GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA_________UUUGGUUCUGAGCC__AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA__AAUA
((((..(.(((((...(((((...(((((((((............(((.....))).........))))))))).)))))..))))).)..))))........... (-13.36 = -16.67 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:34 2006