Locus 553

Sequence ID 3L_DroMel_CAF1
Location 1,580,414 – 1,580,517
Length 103
Max. P 0.661155
window847

overview

Window 7

Location 1,580,414 – 1,580,517
Length 103
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -37.03
Consensus MFE -32.12
Energy contribution -32.10
Covariance contribution -0.02
Combinations/Pair 1.16
Mean z-score -1.56
Structure conservation index 0.87
SVM decision value 0.27
SVM RNA-class probability 0.661155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1580414 103 - 23771897
UUAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAACCUG
((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -33.00)
>DroSec_CAF1 24605 103 - 1
UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAGCUG
((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20)
>DroSim_CAF1 24978 103 - 1
UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAGCUG
((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20)
>DroEre_CAF1 31767 103 - 1
UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCAAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAUCUG
((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20)
>DroYak_CAF1 25713 103 - 1
UCAGCGAGGAUUCAUCCAUUCCCGAUCUGCUGAAACUGGAGGCAAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGCACCUG
((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -34.10)
>DroAna_CAF1 33255 115 - 1
UCAGCGACGACUCAUCCAUUCCGGAGCGACUGAAGCUGGAGGCCAGACUGGAGUCGGCGCUGAGAUCGGUCUGGAUGUAGUCCACCUGCUGGCCAGCCGGCUGAUGCUGGCCCUG
((((((..((((((((((..((((((((.((((..(..(........)..)..))))))))....))))..)))))).))))....))))))...((((((....)))))).... ( -49.50)
>consensus
UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC____________CUGAACCUG
((((((.(((((((((((...(.(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))....................... (-32.12 = -32.10 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:11 2006