Locus 5527

Sequence ID 3L_DroMel_CAF1
Location 15,178,429 – 15,178,519
Length 90
Max. P 0.648732
window8733

overview

Window 3

Location 15,178,429 – 15,178,519
Length 90
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -24.62
Consensus MFE -12.24
Energy contribution -13.02
Covariance contribution 0.78
Combinations/Pair 1.10
Mean z-score -2.30
Structure conservation index 0.50
SVM decision value 0.24
SVM RNA-class probability 0.648732
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15178429 90 - 23771897
UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUC---------------------C---CCCCAGCAA--
..........((((((..........(((((......)))))...((.((.(((.((((((.....)))))).))).)).---------------------)---)))))))..-- ( -20.60)
>DroVir_CAF1 58195 107 - 1
UCUCACACGCGCAGAGACGUACAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUGCUCUGGCACCAC--------A-CGGCCACAACGUCC
...............(((((......(((((......)))))...(((((.(((.((((((.....)))))).))).))))).((((.....--------.-..))))..))))). ( -22.30)
>DroPse_CAF1 59046 114 - 1
UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCUACCAGGGCCAGAACCCAGUCCCAGGCCCAGCAA--
........((.(((((((.....((.(((((......)))))..((((...(((.((((((.....)))))).))).)))).)).(((......))).))))))))).......-- ( -31.00)
>DroGri_CAF1 63597 101 - 1
UCUCACACGCGCAGAGACGUACAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUGC-CUGGCUCC------------CUGCCACAACGU--
........(.((((.((.((......(((((......)))))..((((((.(((.((((((.....)))))).))).))))-)).)))).------------))))).......-- ( -23.80)
>DroAna_CAF1 64680 96 - 1
UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCGACCA-------------G--U---CCCCGGUAA--
..........((((((((..((....(((((......)))))...(((...(((.((((((.....)))))).))).)))))...-------------)--)---.))))))..-- ( -19.00)
>DroPer_CAF1 59186 114 - 1
UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCUACCAGGGCCAGAACCCAGUCCCAGGCCCAGCAA--
........((.(((((((.....((.(((((......)))))..((((...(((.((((((.....)))))).))).)))).)).(((......))).))))))))).......-- ( -31.00)
>consensus
UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCCACCAG__CC___________CC_GCCCCAGCAA__
..........((((((..........(((((......))))).........(((.((((((.....)))))).)))..............................)))))).... (-12.24 = -13.02 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:26 2006