Locus 5520

Sequence ID 3L_DroMel_CAF1
Location 15,159,893 – 15,160,000
Length 107
Max. P 0.562648
window8721

overview

Window 1

Location 15,159,893 – 15,160,000
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 86.28
Mean single sequence MFE -22.18
Consensus MFE -16.58
Energy contribution -16.54
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.562648
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15159893 107 - 23771897
ACUGGGUAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCC--CCCUCCCCCUGCCACGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...(((.((------(((....))).)).))).............................--.......(..((.((((..(((((........)))))..)))).))..)... ( -21.80)
>DroSec_CAF1 49494 109 - 1
ACUGGGCAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUACCCCCCUGCUCCUGUCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...((((((------.(((.((....)).)))..............................(((..((....))..))).................))))))((((....)))) ( -24.30)
>DroSim_CAF1 50890 109 - 1
ACUGGGCAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCCCUGUCCCUGCCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...(((.((------(((....))).)).)))...................................(((...((.((((..(((((........))))).))))..))..))). ( -23.90)
>DroEre_CAF1 50799 93 - 1
ACUGGGUAG------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCC----------------UCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...(((..(------(((....))))...))).................................----------------.(((((........)))))...((((....)))) ( -17.50)
>DroYak_CAF1 51148 109 - 1
ACUGGGUACUGUGACUGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCUCCCCCC--C----UUCGGGAUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...((((((.((((..(((.((....)).)))............................((((...--.----...))))))))((........))))))))((((....)))) ( -23.40)
>consensus
ACUGGGUAC______UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCCCU__CCCUGCCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG
...((((((.......(((.((....)).)))..................................................(((........))).))))))((((....)))) (-16.58 = -16.54 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006