Locus 5518

Sequence ID 3L_DroMel_CAF1
Location 15,155,405 – 15,155,500
Length 95
Max. P 0.599958
window8719

overview

Window 9

Location 15,155,405 – 15,155,500
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 90.84
Mean single sequence MFE -16.17
Consensus MFE -13.02
Energy contribution -12.30
Covariance contribution -0.72
Combinations/Pair 1.22
Mean z-score -1.42
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.599958
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15155405 95 + 23771897
UAUUCGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUGAACCAAA
(((((((((.(...............).))))........((((((((.((((........)))).)))))))).........)))))....... ( -17.66)
>DroSec_CAF1 45070 95 + 1
UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA
..(((((((.(...............).))..........((((((((.((((........)))).))))))))......))))).......... ( -15.66)
>DroSim_CAF1 46427 95 + 1
UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA
..(((((((.(...............).))..........((((((((.((((........)))).))))))))......))))).......... ( -15.66)
>DroEre_CAF1 46225 89 + 1
------CGCGUUAACAUCAAUUAAUUGAGCAUUAAUCAAGUAUACUCAGUAGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUGAACCAAG
------.(((((((..((((....))))...)))))....((((((((.((((........)))).))))))))))................... ( -16.70)
>DroYak_CAF1 46608 95 + 1
UAAAUGCGCGUUAACAUCAAUCAAUUGGGCAUUAAUCAAGUAUACUCGAUGGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUAAACCAAA
..(((((.((...............)).))))).......((((((((.((((........)))).))))))))..................... ( -15.16)
>consensus
UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA
.......((.((((..........))))))..........((((((((.((((........)))).))))))))..................... (-13.02 = -12.30 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:13 2006