Locus 5517

Sequence ID 3L_DroMel_CAF1
Location 15,148,324 – 15,148,416
Length 92
Max. P 0.612536
window8718

overview

Window 8

Location 15,148,324 – 15,148,416
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 84.86
Mean single sequence MFE -24.93
Consensus MFE -20.19
Energy contribution -21.25
Covariance contribution 1.06
Combinations/Pair 1.20
Mean z-score -1.73
Structure conservation index 0.81
SVM decision value 0.16
SVM RNA-class probability 0.612536
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15148324 92 + 23771897
CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA
(.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70)
>DroSim_CAF1 39400 92 + 1
CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA
(.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70)
>DroEre_CAF1 39275 92 + 1
CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUCUCGGCUUUGGCGGAUUA
(.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70)
>DroYak_CAF1 39455 92 + 1
CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACGUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUAGCGGAUUA
......(((((((((((.....)))))))...(((((((((........)))))))))..........(((((.....))))).)))).... ( -28.80)
>DroAna_CAF1 35936 91 + 1
CGGUCAUCGCGCUCGUAAAAUUUAUGACCAUAUACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUGUU-GCUUUCGGGGAUUA
.((((((................))))))...(((((((((........)))))))))...((..(..(((((....-)))))..)..)).. ( -22.59)
>DroPer_CAF1 35399 78 + 1
---------CGGUGCUUCGAUUUAUUACCAUA--CACUGAACAACAUAAUUCUCUGUGGAUCUUUCAGAGAUCUUUUUGGCCUGGCUGU---
---------(((.(((..............((--((..(((........)))..))))((((((...)))))).....)))))).....--- ( -12.10)
>consensus
CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA
......(((((((((((.....)))))))...(((((((((........)))))))))..........(((((.....))))).)))).... (-20.19 = -21.25 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:12 2006