Locus 5511

Sequence ID 3L_DroMel_CAF1
Location 15,121,535 – 15,121,655
Length 120
Max. P 0.797229
window8712

overview

Window 2

Location 15,121,535 – 15,121,655
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.06
Mean single sequence MFE -32.47
Consensus MFE -15.11
Energy contribution -13.83
Covariance contribution -1.27
Combinations/Pair 1.53
Mean z-score -2.01
Structure conservation index 0.47
SVM decision value 0.61
SVM RNA-class probability 0.797229
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15121535 120 - 23771897
AUUUCGAACGAAAUCUUGCCCAGAUUCAUCUAUUUGGCAACAAACAGAUAAAGCAGAUGGACCACCCGGAUUCCCGGGCGAUUCUUUUCGAAGAAAAGCUAUAUAACAAGCAAAAGCUAC
.(((((((.(.((((....(((..((.((((.((((....)))).)))).)).....)))....(((((....))))).)))).).)))))))....(((........)))......... ( -29.70)
>DroGri_CAF1 12014 120 - 1
AUUUUGAGCGGCAUUUGGCUCAGAUUCAUCUGUUUGGCAACAAGCGUGUGGCCCAAGCAGAUCAUCCGGAUUCAAGGGCCAUUUUCUUCGAAGAGAAGCUGUACAACAAACAGAAGCUGC
..(((((((........)))))))....((((((((......(((..(((((((.....((((.....))))...))))))).(((((....))))))))......))))))))...... ( -38.10)
>DroWil_CAF1 11624 120 - 1
AUUUUGAGCGUCAUCUGGCUCAGAUUCAUUUGUUUGGCACCAAACAAGUCAAGGAAUCCCAACAUCCUGAUUCCCGGGCCAUACUCUUCGAGGAGAAACUAUAUAAUAAGCAGAAAUUGU
(((((..((......((((((......(((((((((....)))))))))...((((((..........)))))).))))))..((((....))))..............)).)))))... ( -29.60)
>DroMoj_CAF1 10480 120 - 1
ACUUUGAGCGGCAUUUGGCUCAGAUUCAUUUGUUUGGCAACAAAUACAUAGGCCAAACUGAACAUCCUGACUCCAGGGCUAUACUCUUUGAGGAGAAGCUCUACAAUAAGCAGAAGCUGC
.......(((((.((((..((((.((((...(((((((.............)))))))))))....))))....((((((...((((....)))).))))))........)))).))))) ( -32.02)
>DroAna_CAF1 11458 120 - 1
AUUUCGAACGGAAUCUGGCACAGAUUCAUCUCUUCGGCAACAAACAACUGAAGGAGAUGAACCAUCCAGAUUCCAGGGCCAUCCUCUUUGAGGAGAAAAUCUACAACAAACACAAGCUAC
.((((....(((((((((....(.(((((((((((((..........))))).)))))))).)..))))))))).......(((((...)))))))))...................... ( -35.80)
>DroPer_CAF1 10668 120 - 1
ACUUUGAGCGUAAUUUGGCGCAAAUCCAUCUGUUCGGCAACAAGCAGGUCAAACAGACCGGUCACCCAGACUCCCGGGCCAUACUCUUCGAGGAGAAGAUUUACAACAAACAGAAGCUAG
.......((((......)))).......((((((.(((........((((.....))))((((.....)))).....)))....(((((.....))))).........))))))...... ( -29.60)
>consensus
AUUUUGAGCGGAAUCUGGCUCAGAUUCAUCUGUUUGGCAACAAACAAGUAAAGCAAACCGAACAUCCAGAUUCCAGGGCCAUACUCUUCGAGGAGAAGCUAUACAACAAACAGAAGCUAC
.(((((((.......((((...........((((((....))))))...................((........)))))).....)))))))........................... (-15.11 = -13.83 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:06 2006