Locus 5494

Sequence ID 3L_DroMel_CAF1
Location 15,065,921 – 15,066,031
Length 110
Max. P 0.514615
window8686

overview

Window 6

Location 15,065,921 – 15,066,031
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 72.61
Mean single sequence MFE -18.39
Consensus MFE -9.98
Energy contribution -9.65
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.70
Structure conservation index 0.54
SVM decision value -0.04
SVM RNA-class probability 0.514615
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15065921 110 + 23771897
UGCAUUAAUACAUUUUAUUGUGGUUAGUUUAUGCGUGAACCAAACGGAUACUGUUAAUAUGAUUUUCUAGCCAAACAUAAAAUAACUAGAAGUAUUCGUUCAUAAUUGAA
.((((.(((.(((......)))....))).))))((((((..(((((...))))).....((.(((((((...............)))))))...))))))))....... ( -17.16)
>DroSec_CAF1 31105 94 + 1
UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCUUAAAU--------UUCUG----ACUGAUUUUCUAGCCAAACAUGAAAUAACUAAAAGUAUG----CAUAAUUAUA
.......((((((.......(((((((((((((((..((.--------.((..----...))..))..))).....)))))))))))).....)))----)))....... ( -19.40)
>DroSim_CAF1 31090 83 + 1
UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCGUGAUU--------UUCUG----ACUG-----------AAACAUGAAAUAACUAAAAGUAUG----CAUAACUAUA
.......((((((.......(((((((((((((......(--------(((..----...)-----------)))))))))))))))).....)))----)))....... ( -18.60)
>consensus
UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCGUGAAU________UUCUG____ACUGAUUUUCUAGCCAAACAUGAAAUAACUAAAAGUAUG____CAUAAUUAUA
(((..(((((.....)))))(((((((((((((..........................................)))))))))))))...)))................ ( -9.98 =  -9.65 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:41 2006