Locus 5478

Sequence ID 3L_DroMel_CAF1
Location 14,978,543 – 14,978,633
Length 90
Max. P 0.642393
window8667

overview

Window 7

Location 14,978,543 – 14,978,633
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -17.28
Consensus MFE -16.18
Energy contribution -16.68
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -0.95
Structure conservation index 0.94
SVM decision value 0.23
SVM RNA-class probability 0.642393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14978543 90 - 23771897
AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80)
>DroSec_CAF1 30661 90 - 1
AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80)
>DroSim_CAF1 31669 90 - 1
AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80)
>DroEre_CAF1 30782 90 - 1
AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80)
>DroYak_CAF1 32524 90 - 1
AAGACAAAGGCUCCUACUUCUACGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80)
>DroAna_CAF1 29967 85 - 1
AAGACAAAGGCA------UCUCCGCCCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUAGUAGUC
.((((((((((.------.....)))....((((.........))))......)))))))............(((..(....)..)))... ( -14.70)
>consensus
AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG_C
.((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))..... (-16.18 = -16.68 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:22 2006