Locus 5474

Sequence ID 3L_DroMel_CAF1
Location 14,970,060 – 14,970,160
Length 100
Max. P 0.770503
window8662

overview

Window 2

Location 14,970,060 – 14,970,160
Length 100
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.23
Mean single sequence MFE -32.40
Consensus MFE -20.77
Energy contribution -21.00
Covariance contribution 0.23
Combinations/Pair 1.26
Mean z-score -1.58
Structure conservation index 0.64
SVM decision value 0.53
SVM RNA-class probability 0.770503
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14970060 100 + 23771897
ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUCGGCUCCACGGGUGAUCGCUGCGCGAAAA----------------AAGACAAAAUAUAUAC
.(((.(((((....(((.(((((.(.....((....))).))))))))((.((.(((......))).)).))))))))))....----------------................ ( -29.60)
>DroSec_CAF1 22233 101 + 1
ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGCCUUCCCGACCAGUCGGCUCCACGGGUGACCGCUGCGAGAAAAG---------------AAGACAAAAUAUAUAC
...(((((((..((((((..((((.......(((......))).........)))).)))))).((....)))))))))......---------------................ ( -33.39)
>DroSim_CAF1 22202 101 + 1
ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUAGGCUCCACGGGUGACCGCUGCGAGAAAAG---------------AAGACAAAAUAUAUAC
..(((((.(...(((((.....)))))...).)))))...((((((((........))((((((((....))).)).)))....)---------------)))))........... ( -33.00)
>DroEre_CAF1 21922 105 + 1
AUGUUGCGGCAAUGGGGCAGCACUCCGAAUUGGCAGCAGCGUCUGCCCGACCAGUCGGCUCCACGGGUGACCGCUGCAACAAAAAGG-----------AAAAACCAAAAUACAUAC
.(((((((((..((((((.............(((((......)))))(((....))))))))).((....)))))))))))....((-----------.....))........... ( -40.30)
>DroYak_CAF1 22771 116 + 1
ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAGCAGCGUCUGCCCGACCAGUCGGCUCCACGGGUGACCGCUGCAAGAAGAGGAAACAGAAAACAGAAAACCAAAAUACAUAC
...(((((((..((((((..((((.......(((((......))))).....)))).)))))).((....))))))))).....(....).......................... ( -38.20)
>DroAna_CAF1 19501 88 + 1
GCAUUCCGACAAUGAGCCAACACCCCGAACUGGCAGCAUCGUCUUCCCGACCAGUCCGCUCCACGGGCGACCGCUGUGAAUAAUAGG--------------A--------------
....((((((.(((.((((...........))))..))).))).......(((((.((((.....))))...)))).).......))--------------)-------------- ( -19.90)
>consensus
ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUCGGCUCCACGGGUGACCGCUGCGAGAAAAG_______________AAGACAAAAUAUAUAC
...(((((((..(((((.....)))))....((..((..(((....((((....))))....))).))..)))))))))..................................... (-20.77 = -21.00 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006