Locus 5467

Sequence ID 3L_DroMel_CAF1
Location 14,944,001 – 14,944,100
Length 99
Max. P 0.859810
window8650

overview

Window 0

Location 14,944,001 – 14,944,100
Length 99
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.05
Mean single sequence MFE -27.12
Consensus MFE -20.68
Energy contribution -19.76
Covariance contribution -0.92
Combinations/Pair 1.27
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 0.82
SVM RNA-class probability 0.859810
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14944001 99 - 23771897
CAUUAAACUGCAUUUGUAGAGGGGCGUACGAGUUC---UUG--CAUAUCUACACAGGCAUACAAUUUCUAUAUGCAUCGUAUGUAUCUGGAUCUGUUGUGUCCA
..............((((((...(((.........---.))--)...))))))..((.(((((((.((((.((((((...)))))).))))...))))))))). ( -24.70)
>DroSec_CAF1 124351 101 - 1
CAUUAAACUGCAUUUGCAGAGGGGCGUACGCGCUC---UUGUACAUAUAUCUACAGGCAUACACUUUCUAUAUGCAGCGUAUGUAUCUGGAUCUGUUGUAUCCA
.......((((....))))(((((((....)))))---))(((((((.(((((...((((((.((..........)).))))))...))))).)).)))))... ( -28.00)
>DroSim_CAF1 122119 101 - 1
CAUUAAACUGCAUUUGCAGAGGGGCGUACGCGUUC---UUGUACAUAUAUCUACAGGCAUACACUUUCUAUAUGCAGCGUAUGUAUCUGGAUCUGUUGUAUCCA
.......((((....))))((..((((((((....---(((((........)))))(((((.........))))).))))))))..))(((((....).)))). ( -27.90)
>DroEre_CAF1 119201 94 - 1
CAUUAAACUGCAUUUGCAGAGGGGCGUGAGGGUUC---CUG----UGUAUCUACAGGCGUACAACUUCUAUAUGCACCGUAUGUAUCUGGAUCUG---UAUCCA
.......(((....((((.((((((......))))---)).----))))....)))(.(((((...((((.(((((.....))))).))))..))---))).). ( -25.40)
>DroYak_CAF1 120188 97 - 1
CAUUAAACUGCAUUUCCAGAGGGGCGUACAGGAACCCUCUG----UAUAUCUACAGGCAUACAAUUUCUAUAUGCACCGUAUGUAUCUGGAUCUG---UAUCCA
........((((..((((((...((((((.((......(((----((....)))))(((((.........))))).)))))))).))))))..))---)).... ( -29.60)
>consensus
CAUUAAACUGCAUUUGCAGAGGGGCGUACGCGUUC___UUG__CAUAUAUCUACAGGCAUACAAUUUCUAUAUGCACCGUAUGUAUCUGGAUCUGUUGUAUCCA
.......((((....))))((..((((((((.......(((............)))(((((.........))))).))))))))..))((((.......)))). (-20.68 = -19.76 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:06 2006