| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,932,846 – 14,932,950 |
| Length | 104 |
| Max. P | 0.636361 |
| Location | 14,932,846 – 14,932,950 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.15 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -22.67 |
| Energy contribution | -22.90 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14932846 104 + 23771897 -AAGGGAGAACCUUAAAACAA-AGAAGCUCUGCGUAAUGCGGGGCACAGCAA--UCAGACGG-GGGCCAAUUAGGGACCCUCUUAAUGACCGUAAGGAUAGCCA-------AAGGA -.........((((.......-....(((((((.....)))))))...((..--(((...((-(((((......)).)))))....)))((....))...))..-------)))). ( -31.90) >DroSec_CAF1 113534 104 + 1 -AGGGGAGAACCUUAAACCAA-GGAAGCUCUGCGUAAUGCGGGGCACAGCAA--UCAGACGG-GGGCCAAUUAGGGACCCUCCUAAUGACCGUAAGGAUGGCCA-------AAGGA -((((.....))))...((..-....(((((((.....))))))).......--........-.((((((((((((....)))))))..((....)).))))).-------..)). ( -35.40) >DroSim_CAF1 110768 104 + 1 -AGGGGAGAACCUUAAACCAA-AGAAGCUCUGCGUAAUGCGGGGCACAGCAA--UCAGACGG-GGGCCAAUUAGGGACCCUCCUAAUGACCGUAAGGAUAGCCA-------AAGGA -((((.....))))...((..-....(((((((.....)))))))...((..--(((...((-(((((......)).)))))....)))((....))...))..-------..)). ( -33.30) >DroEre_CAF1 108601 111 + 1 -GAGGGAGAACCUUGAACCAA-AGAAGCUCUGCGUAAUACGGAGCACAACAA--UCAGGUGG-GGGCCAAUUAGGGACCCUCUUAAUGACCGUCAGGAUAUCCAAACAUGCAAGGA -.........(((((......-....((((((.......)))))).......--(((...((-(((((......)).)))))....)))..((..((....))..))...))))). ( -29.50) >DroYak_CAF1 109015 103 + 1 -AGGGGAGAAUCUUAAACCAA-AGAAGCUCUGCGUAAUACGGAGCACAGCAA--UCAGACGG-GGGCCAAUUAGGGACCCGCCUAAUGACCGUGAGGAUAUUC--------AAGGA -.((.(((...)))...))..-....((((((.......)))))).......--.....(((-(..((.....))..))))(((((((.((....)).)))).--------.))). ( -27.90) >DroAna_CAF1 99272 106 + 1 UAAGGGGGACCCUUGAAGCAAGAGAAGCUCCGCGUAAUAAGGAGCU--ACAAUUUCAGUCGGGGGGCUAAUUAGAGACGCCCCUAAUGAUCCUGCGGAUAAUCA--------AGUA ...((....))(((((.(((.(((.((((((.........))))))--.)....(((....((((((...........))))))..))))).)))......)))--------)).. ( -33.70) >consensus _AAGGGAGAACCUUAAACCAA_AGAAGCUCUGCGUAAUACGGAGCACAGCAA__UCAGACGG_GGGCCAAUUAGGGACCCUCCUAAUGACCGUAAGGAUAGCCA_______AAGGA .((((.....))))...((.......((((((.......)))))).........(((...((.(((((......)).))).))...)))((....))................)). (-22.67 = -22.90 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:45 2006