Locus 5444

Sequence ID 3L_DroMel_CAF1
Location 14,911,196 – 14,911,313
Length 117
Max. P 0.860455
window8613

overview

Window 3

Location 14,911,196 – 14,911,313
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.70
Mean single sequence MFE -42.90
Consensus MFE -32.58
Energy contribution -33.70
Covariance contribution 1.12
Combinations/Pair 1.22
Mean z-score -2.02
Structure conservation index 0.76
SVM decision value 0.83
SVM RNA-class probability 0.860455
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14911196 117 + 23771897
GAAGGCUUGGAGUUCUUGAAGACCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUAAGAGAUUUCUUCUCUGUCACUCCA---UUGAAGUUGGAAACAAGAGCG
....((((((((((.(((((((((........))))))))).))))))(((((.(..((((((..((.....(((((.....)))))))..)))))---)..)..))))).....)))). ( -43.50)
>DroSec_CAF1 93552 117 + 1
GAAGGCUUGGAGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUAGAGGCGCCGGUGAGAGAUUUCUUCUCUGGCAUUCCA---UUAAAGUUGGAAACAAGAGCG
....(((((((((..(((((((((........)))))))))..((((((((.....)).))))))(((((.((.((....)))).)))))))))).---......(((....))))))). ( -40.20)
>DroSim_CAF1 90669 117 + 1
GAAGGCUUGGAGUUCUUGAAGAUCUUCUUUAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUGAGAGACUUCUUCUCUGGCACUCCA---UUAAAGUUGGAAACAAGAGCG
....((((((((((.(((((((((........))))))))).))))))(((((.(((((((((..(((((.((.((....)))).))))).)))))---))))..))))).....)))). ( -47.00)
>DroYak_CAF1 86718 117 + 1
GCAGGCUUCGGGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUAAGAGAUUUCUUCUCUGGCACACCG---UUGAAGUUGGAAACGAGAGCG
....((((((..((((((((((((........)))))))))(((((((....((((((((....)))))((.(((((.....))))).))..))).---..)))))))))).))).))). ( -41.60)
>DroPer_CAF1 141216 120 + 1
CCCGCCUUCGAGUGGGUGAAGAUCCGCCUGAUGCUCUUUAGCAGCUUCUUCAUGUUGGUGGCGGCGCCGGUGAGAGAGCUCUUCUCCGGCACACCAGAGCUGGAGUUGAAACGAUGAGCU
.......(((.((((((....)))))).))).((((.....(((((((......((((((.....(((((.((((....))))..))))).))))))....))))))).......)))). ( -42.20)
>consensus
GAAGGCUUGGAGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUGAGAGAUUUCUUCUCUGGCACUCCA___UUGAAGUUGGAAACAAGAGCG
....((((.(((((.(((((((((........))))))))).)))))((((((.....(((((..(((((.((((....))))..))))).)))))...))))))(((....))))))). (-32.58 = -33.70 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:29 2006