Locus 5437

Sequence ID 3L_DroMel_CAF1
Location 14,895,877 – 14,895,968
Length 91
Max. P 0.946233
window8604

overview

Window 4

Location 14,895,877 – 14,895,968
Length 91
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 77.38
Mean single sequence MFE -20.64
Consensus MFE -14.97
Energy contribution -14.87
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.73
SVM decision value 1.36
SVM RNA-class probability 0.946233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14895877 91 + 23771897
AUGU---------------AGGAUGUGUGCUUUAUAUCUUAAGGGCAC-CAGAAUAUAUUCUGAUUUAAUUAUCUUUAUUAGGUAUCCGAUUAAUGUGGUGAUAAAG
...(---------------((((((((.....)))))))))....(((-(((((....)))(((((....(((((.....)))))...)))))...)))))...... ( -16.40)
>DroSec_CAF1 77860 107 + 1
AUGUAUACUGUUAUGUUGCAGGAUGUGUGCCUUAUAUCUUAAGGGCACCCAGAAUAUAUUCUGCUUUAAUUAUCUUUAUUAGGUAACUUAUUAAUGUGAUGAUGAAC
.....((..((((((((((((((((((((((((........))))))).......))))))))).....((((((.....))))))......))))))))..))... ( -24.81)
>DroSim_CAF1 73846 83 + 1
-----------------------UGUGUGCUUUAUAUCUUAAGGGCAC-CAGAAUAUAUUCUGUUUUUAUUAUCUUUAUUAGGUAUCUUAGUAAUGUGAUGAUGAAC
-----------------------.((((.(((........))).))))-(((((....)))))..(((((((((.((((((((...))))))))...))))))))). ( -20.70)
>consensus
AUGU_______________AGGAUGUGUGCUUUAUAUCUUAAGGGCAC_CAGAAUAUAUUCUGAUUUAAUUAUCUUUAUUAGGUAUCUUAUUAAUGUGAUGAUGAAC
..........................(((((((........))))))).(((((....))))).....((((((..((((((........)))))).)))))).... (-14.97 = -14.87 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:20 2006